Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01022 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTATCAGGAAGGACAGGGCCCCACTCACTTCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGAGGATGTTAAAATGATATCAGGGGAGGCTCCTATAATTTTCTCCAAGGCTTGTGAGCTATTCATTGAGGAGCTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTTTGCACAAAGATGACTTGACCTCTGCAGTTATAGCCACTGATATATTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAGCCATGCACTTGGTCCCTCCACCACCACTGTCATGGAGGTGGAGACTATAGATTACTCTTGA 375 0.4613 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKDDLTSAVIATDIFDFLITLVSNSDSHALGPSTTTVMEVETIDYS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01022 124 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Spst5g01022 124 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Spst5g01022 124 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Spst5g01022 124 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Spst5g01022 124 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01022 Spst-Chr5 10348240 10348614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01022 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.651 1.12e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst5g01022 CBFD_NFYB_HMF 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01022 - - ccaj:109817175 224.172