Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01021 ATGAAGAACCTCATGTCTTTTAGGAGAATCATTTTCCTATGCTATCATATGCTTGTCTATCTTTCTGAAATTTCCTTGGCACTTGATTCCATTTCTCAAGACCTGTCCCTAAGTGATGATGTTAATAACACCTTGGTTTCCAAAGATGGAACCTTTGAACTTGGATTCTTCACCCCAGGAAATTCTCAGAAACGTTACCTGGGGATTTGGTACAGGAAAATCCCTATTCAAACAGTGGTTTGGGTTGCAAACAGGGTAAATCCAATCAATGATTCATCTGGCATCTTGAGAATGAACACCAGCTCTGGGAACCTTGTCCTTACACAGAATGGCAAAGTTGTTTGGTCTACAACCTCTTTGAGAAAAGTAGAAAGTCCAGTGGCCCTTCTCTTAGATTCTGGAAATCTTGTGTTAAGAGATGAGAAAGAGGCAAACATTGAGGCCTACTTGTGGCAGAGCTTTGACTACCCTACTGACACTTTCTTACCTGAAATGAAGTTTGGTTGGGACTTGAGAACTGGTCTTAATAGAAAGCTAACAGCTTGGAAGAGTCCTGACGATCCATCTCCTAGTGACTTTTCATTTGGTATGGTACTCAACAACTATCCTGAAGCATACATGATGAAGGGTAACCAAAAGTTCTATCGAAGTGGACCATGGAATGGTTTACATTCAAGTGGTTCACCACATGTTAAGGCCAACCCCATTTATGACTTCAGGTTTGTTTTCAACGAGAATGAAGTTTACTACACATATAGCCTTAAGAACTCCTCTGTGATCTCAAGGTTGGTTCTGAATGCAACAAGCTACGTTCGTAGGCGGTATGTGTGGATTGAATCAAAGCAAATATGGGAAGTCTACACTTCAGTGCCACTGGACTTATGTGACAGTTATTCCCTTTGTGGAGCTAATGCAAATTGTGTTATTACAGATTCACCTGTGTGCCAATGTTTGGAAGGGTTCAAGCCTAAGTCACCTCAAGCATGGGCCTCAATGGATTGGTCTCATGGATGTGTCCGCAATAAGGAATTAAGCTGTGAAAACAAGCTCAAGGATGGATTTATCAAATTGGCTGAGATGAAAACGCCTGACACTACACATAGTTGGCTGGATCAGACAATTGGGCTAGAGGAATGCAGAACCAAGTGCTTGGACAACTGTTCTTGTATGGCTTATGCAAATTCAGATATCAGTGGACAAGCAAGTGGTTGTGCCATGTGGTTTGGTGACCTTATTGATTTTAGACAGTTTTCAGCTGGAGGCCAGGATGTATATGTTCGAATGGATGCTTCAGAATTAGAACACACCAGTGAGGGCCCCAAGAAGGGAAGAGTCCTGGTGGCAGTAACAGTTTCTTTGGCCGTGGCAGTAGTTTCTGGTATTCTAATAATACTTGGCTTGTGCAATAGAAAGAAATCACGCGCCAATGTGAAAGAGAGATCAGACCTCAGTATCAAATCATATCAAAACAGTGGAATGCAAGTGGATGATATGGACCTACCAGTTTTTGACTTGTCAGCTATAGCTATGGCCACTAACAACTTTACAATCAAGAACAAAATTGGAGAAGGTGGTTTTGGATCTGTATATAAGGGAACTCTAGCAGATGGGTTAGAAATTGCTGTGAAGAGGCTTTCAGAAAGTTCAGGACAAGGATTGACTGAATTCAAGAACGAAGTAAAATTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCTTTGAAGGAGAGGAAAAAATGTTGGTTTATGAGTACATGATAAATGGTAGCCTGAACTCATTTATTTTTGGTATGGATCCAAAGAATGAATTGCTTATTTAG 1836 0.409 MKNLMSFRRIIFLCYHMLVYLSEISLALDSISQDLSLSDDVNNTLVSKDGTFELGFFTPGNSQKRYLGIWYRKIPIQTVVWVANRVNPINDSSGILRMNTSSGNLVLTQNGKVVWSTTSLRKVESPVALLLDSGNLVLRDEKEANIEAYLWQSFDYPTDTFLPEMKFGWDLRTGLNRKLTAWKSPDDPSPSDFSFGMVLNNYPEAYMMKGNQKFYRSGPWNGLHSSGSPHVKANPIYDFRFVFNENEVYYTYSLKNSSVISRLVLNATSYVRRRYVWIESKQIWEVYTSVPLDLCDSYSLCGANANCVITDSPVCQCLEGFKPKSPQAWASMDWSHGCVRNKELSCENKLKDGFIKLAEMKTPDTTHSWLDQTIGLEECRTKCLDNCSCMAYANSDISGQASGCAMWFGDLIDFRQFSAGGQDVYVRMDASELEHTSEGPKKGRVLVAVTVSLAVAVVSGILIILGLCNRKKSRANVKERSDLSIKSYQNSGMQVDDMDLPVFDLSAIAMATNNFTIKNKIGEGGFGSVYKGTLADGLEIAVKRLSESSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCFEGEEKMLVYEYMINGSLNSFIFGMDPKNELLI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01021 611 ProSiteProfiles Protein kinase domain profile. 515 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01021 611 Pfam Protein tyrosine and serine/threonine kinase 516 600 IPR001245 GO:0004672|GO:0006468
Spst5g01021 611 Pfam D-mannose binding lectin 78 183 IPR001480 -
Spst5g01021 611 ProSiteProfiles PAN/Apple domain profile. 346 430 IPR003609 -
Spst5g01021 611 Pfam PAN-like domain 346 413 IPR003609 -
Spst5g01021 611 SMART tyrkin_6 515 610 IPR020635 GO:0004713|GO:0006468
Spst5g01021 611 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Spst5g01021 611 Gene3D Phosphorylase Kinase; domain 1 473 590 - -
Spst5g01021 611 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 154 - -
Spst5g01021 611 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Spst5g01021 611 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 188 IPR036426 -
Spst5g01021 611 SUPERFAMILY Protein kinase-like (PK-like) 488 605 IPR011009 -
Spst5g01021 611 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Spst5g01021 611 CDD B_lectin 34 157 IPR001480 -
Spst5g01021 611 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 600 - -
Spst5g01021 611 SMART ntp_6 349 428 IPR003609 -
Spst5g01021 611 SMART blect_4 36 157 IPR001480 -
Spst5g01021 611 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 478 590 - -
Spst5g01021 611 CDD PAN_AP_plant 344 427 - -
Spst5g01021 611 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Spst5g01021 611 Gene3D - 25 154 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01021 Spst-Chr5 10165697 10168318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01021 419 609 Receptor kinase-like Gene Family AT4G23190 44.560 7.94e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst5g01021 S_locus_glycop 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01021 - - gmx:100778155 1035.4