Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01018 ATGGCAGATGATCAATTTCAGGCAAGTGGGAACTGGTGGGACACAGCAAGGAACGTGAGGTATGAAAGCGAGGCATCACAATCATCTTCCTCAGCCATCACCAACATAGGCAACTTTGGTTGGCAAGCTTCAGATATGGCAGATATGAAGCCGAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAGCCCCCAGATTCTACAACTTCCACTGACCCCAACTTGCATATGATGGGTCTAGGCCTTTCATCCCAAGCCATGGATTGGAATCAAGTATCTTTATTACGAGGAGAGAAGGGTCCAGAGAATAGTTTCAGATCGATGTTGCAAGAGAACTTGAGCTCATCAAGAACCAATTTTCAGCAAGAAACTGGGGTGGGGTTGTCTCAACAAGTTCAATGGAGGCCAGAGAAGATGTTCTCTGCAGAGTCTTCAACCAATGAGTTCAAGCAAGTGAATAGGGGTTTCTCCTTGGATCAAAGCAAGTTTAGTCCTCAATATAGCTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCCTCTAACTTTCATATGGATTCCTCAGCCTTATATGGGACCCCTTCAATATTGCAAGGGCTATTGGGACCTGATCACAATAACCAACCCCAACCCCAACCCCAACAACAACAACAACAACAACCCTCTTCCTTTGAGAACCGCTCCATGAGTTTTCTATACCCAACAAGCTATGGAAACTCTAATGAACTGGTCCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGGTTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCACCTTTTTGGAACGCTGCTGAGGTTGCAAACATCAAAGATGTTCGGTCCAGCTTCTTCCCTTCATTGCAGCCCCCCTTCTCCACGCCAAATTTTGAAGTACAGTCAAAGAATATATCTGAAGTTTGGGAGTCTGGAACTGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCTTTAAGTACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATCTAAGGAGACTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTGTGCTTGGTGCCTGTTTCGAGCACATTTCCAGTGACTCATGAAACCACAGTTGATTTTTGGACATCAACATTCGGAGGAGCTTCCAGATAA 1392 0.4569 MADDQFQASGNWWDTARNVRYESEASQSSSSAITNIGNFGWQASDMADMKPRSSMDSSSVVFHDSQNKLQPPDSTTSTDPNLHMMGLGLSSQAMDWNQVSLLRGEKGPENSFRSMLQENLSSSRTNFQQETGVGLSQQVQWRPEKMFSAESSTNEFKQVNRGFSLDQSKFSPQYSSGDSTVTSQGLPSSNFHMDSSALYGTPSILQGLLGPDHNNQPQPQPQQQQQQQPSSFENRSMSFLYPTSYGNSNELVPSWSKVPQFLRGSPPKQPPNNQLHFTNNAPFWNAAEVANIKDVRSSFFPSLQPPFSTPNFEVQSKNISEVWESGTVGKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQNSGKSKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTSTFGGASR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01018 463 Gene3D - 353 412 IPR036638 GO:0046983
Spst5g01018 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 155 444 - -
Spst5g01018 463 SMART finulus 354 398 IPR011598 GO:0046983
Spst5g01018 463 MobiDBLite consensus disorder prediction 326 350 - -
Spst5g01018 463 FunFam Transcription factor bHLH123 family 353 415 - -
Spst5g01018 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Spst5g01018 463 MobiDBLite consensus disorder prediction 48 80 - -
Spst5g01018 463 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Spst5g01018 463 MobiDBLite consensus disorder prediction 51 80 - -
Spst5g01018 463 MobiDBLite consensus disorder prediction 410 429 - -
Spst5g01018 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 408 IPR036638 GO:0046983
Spst5g01018 463 MobiDBLite consensus disorder prediction 169 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01018 Spst-Chr5 10138690 10141733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01018 103 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.231 7.99e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01018 - - gmx:100778697 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01018 5 10138690 10141733 Spst5g01018 5 10138690 10141733 ECH