Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01014 ATGGGTGCACATGCAAAGAAAGCTATGAAGAAGAACCTGAAAAGGGTTTCGTCTAATAAGCTGTCTCAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTTCTGCTCGCAAGATAGGAGAACAGAAGCCGCCAGAGAATACCGCCACGGTTTTGTACGTGTCGAGGATTCCGCATGGATTTTATGAGAAGGAAATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCGAGAAATAAAAAGACGGGAAAATCAAGACATTTTGGGTACATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTCTTTGAACATCTTCTACAAGTTTTTGTGGTACCTCCAGAGCATGTCCATTCAAGATTATGGAGAGGATTCAATTACCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTGGAAGAGCACAAGAAAATGGTGGACAGGATTCTAAAGCATGACCAAAAGCGACGTAAAAGAATAGAGGCTGCTGGCGTAGATTACGAATGCCCTGAGATTATCGGTAACATCCACCCTGCTCCAAAGAAAATAAAGTTTGATGACTAA 630 0.4206 MGAHAKKAMKKNLKRVSSNKLSQGADFLPLEGGSARKIGEQKPPENTATVLYVSRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPPEHVHSRLWRGFNYRHKPLDYVQIERKRHDKERTLEEHKKMVDRILKHDQKRRKRIEAAGVDYECPEIIGNIHPAPKKIKFDD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01014 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Spst5g01014 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Spst5g01014 209 Coils Coil 147 167 - -
Spst5g01014 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 5 208 - -
Spst5g01014 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Spst5g01014 209 SUPERFAMILY RNA-binding domain, RBD 29 138 IPR035979 GO:0003676
Spst5g01014 209 CDD RRM_NIFK_like 50 122 - -
Spst5g01014 209 Gene3D - 4 123 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01014 Spst-Chr5 10035297 10037687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01014 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 6.38e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01014 K14838 - gmx:100778780 370.548