Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01007 ATGGATTCACAACAGCTTTTCAGTTCTGGTGTTGCTAGTGCAGGATTACCTTACATGTCATCTTTTCCCACAGTTCCATCCCTACCCAACAGGCTGCTTGGACCCTTGAAATATGACACAGGAAACTCACCTAATTCACCCTTTTCCACTTACTTTGATTCTGACACCCTTTCTGCATTGAGTGACGGCAAGGACCAATACAGCCCCGGAGAAATCCTCTCTTCACTGGAAACCAATTATTATATGTATGGATCAATCTCATCTGTGGACGGGCTCATAGACAATTTTCCACTATATTCTGCGAGGAGCTCTCTTCTACAGAATGTGAATTGTAATCAGAAAATCCAACACGCTTTGCTGGAGCTAGAAACTGCTCTGATGGCCCCTGATGATGATCAAGCTAACACACCAAATACTTTGGCTGACGGCAGCAGGCCAATGGCATCTGGCCAGAGATACAGGTCCTGGAACCATGAGAACCATGGCTCACAATATACTCAAACTCAGCCATCATGTGTTCCTAGCAGTTGGCTATCAAGTGAAGTTGTGCATGCAGAGAAACGGCAAAAGTTGATAGAGGAACCATCACTACAAGCTTTCCCACCAAACAATTTGAAGCAATTGCTGATTGCATGTGCCAAATCCCTTTCTGAAAACAACATGAAAGATTTTGATCAATTGGTAGCAAAGGCCAGAGATGCCGTGTCCATCAATGGGGAGCCAATCCAGAGGCTTGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAACATCAGGGAAGAACATCTATCATGCCCTTAGTTGCAGAGAGCCTGAAGGTGAAGAATTACTCTCTTACATGCAACTTCTGTTTGAGATCTGCCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCGGAAGCCTGCAGAAACGAGGATCGCATACACATCATAGACTTCCAAATTGCTCAGGGATCTCAATGGATGACTCTTCTTCAAGCCCTTGCAGCGAGACCTGGTGGTGCTCCCCATGTTAGGATCACGGGGATTGATGACCCTGTTTCTAAATACGCTCGTGGCGACGGATTAGAGATGGTTGGGAAAAGGTTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTGCCTGTTTTTGCTCCAGAAGTGACAAGGGAAATGCTTGATATCAGGCCTGGAGAGGCCTTGGCTGTGAACTTCCCCTTGCAGCTCCATCACACAGCCGATGAGAGTGTTCATGTGAGTAACCCAAGGGATGGACTATTGAGATTGGTAAAGTCACTTGCTCCCAAGGTGACCACACTGGTGGAGCAGGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTATTGAAACCTTGGATTACTACTTGGCGATCTTTGAGTCTATTGATGTCACTCTCCCAAGAGATAGCAAGGAACGGATCAATGTGGAGCAACATTGCCTGGCCAGGGATATAGTGAATATTATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTATTAGGCAAGTGGAAATCCAGGTTAACAATGGCTGGCTTCAGTCAGTGTCCTTTGAGCTCTTATGTGAATTCTGTCATAAGGAGCCTTCTGAGGTGCTATTCAGAACATTATACTCTAGTGGAGAAGGATGGAGCCATGTTGTTGGGTTGGAAGGACAGAAATCTGACATCAGCTTCAGCCTGGCATTGCTGA 1731 0.4587 MDSQQLFSSGVASAGLPYMSSFPTVPSLPNRLLGPLKYDTGNSPNSPFSTYFDSDTLSALSDGKDQYSPGEILSSLETNYYMYGSISSVDGLIDNFPLYSARSSLLQNVNCNQKIQHALLELETALMAPDDDQANTPNTLADGSRPMASGQRYRSWNHENHGSQYTQTQPSCVPSSWLSSEVVHAEKRQKLIEEPSLQAFPPNNLKQLLIACAKSLSENNMKDFDQLVAKARDAVSINGEPIQRLGAYMVEGLVARKETSGKNIYHALSCREPEGEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEMVGKRLALMSEKFGIPVEFHGVPVFAPEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLAPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFSQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKDRNLTSASAWHC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01007 576 ProSiteProfiles GRAS family profile. 196 575 IPR005202 -
Spst5g01007 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 169 571 IPR005202 -
Spst5g01007 576 Pfam GRAS domain family 205 574 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01007 Spst-Chr5 9783959 9785689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01007 196 574 GRAS Transcription Factor Family AT5G48150 63.158 1.00e-172 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g01007 GRAS 2.7e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01007 - - gmx:100799073 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01007 5 9783959 9785689 Spst5g01007 5 9783959 9785689 ECH
Spst5g01007 5 9783959 9785689 Spst11g00769 11 31421277 31422968 PCT