Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01004 ATGGTGATTGGTATAGAGGAAAGGATTAGGATTAGATTGTCTTGGATTTGCTTTGGTTATAGTGCTATCTTTCTATTTTGGGTCTTTGATGCATTTCTTGTTCCGTGTGCTAGTGGTATATCAATGGATTGGATGATCAATAGGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAGGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCAACTGGGGAGACTGTTGCAGTTAAAGTTCTCGCAACTAATTCTAAACAAGGGGAGAAAGAATTTCACACAGAGGTGATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTGAATTTGGTTGGGTATTGTGCGGAAAAGGGGCAACATATGCTTATATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGTTGGGAATTGAGGGTTCATATAGCTTTAGATGTAGCAAGAGGCATAGAGTATCTTCATGTTGGGGCAGTTCCTCCAGTAATCCATAGAGATATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGCACCTTTGGTTATCTTGATCCTGAGTATATCTCTTCAGGAACATTCACCAAAAAGAGTGATGTATACAGTTTTGGGGTTTTGCTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAAGGTCTAATGGAATATGTTGAGCTTGCAGCCATGAACAGTGAGGGGAAAGTTGGTTGGGAGGAGATAGTTGATTCTAGGCTTGAGGGAAAATGTGATTTTGAAGAGCTGAATGAAGTGGCGGCCCTTGCCTACAAATGCATCAGCCGTGCCCCCAAGAAACGTCCTTCAATGAGGGACATTGTGCAAGTTTTGACTCGAATCCTTAAATCAAGGCACCAAAGGAATCATCATCACAAAAAGTCCCTCTCAGCCACAGCTGATGAAGTTTCAATTGATGTTGATCAGCTAGAAACCAAGAGTTCTCTCCCTGCCCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATGTATGATTTGTAG 1122 0.4198 MVIGIEERIRIRLSWICFGYSAIFLFWVFDAFLVPCASGISMDWMINRDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGSLASHLYSEENGALGWELRVHIALDVARGIEYLHVGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNSEGKVGWEEIVDSRLEGKCDFEELNEVAALAYKCISRAPKKRPSMRDIVQVLTRILKSRHQRNHHHKKSLSATADEVSIDVDQLETKSSLPAHRREESIDSTADMYDL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01004 373 PANTHER OS01G0750732 PROTEIN 48 344 - -
Spst5g01004 373 Gene3D Transferase(Phosphotransferase) domain 1 131 346 - -
Spst5g01004 373 SMART serkin_6 55 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01004 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Spst5g01004 373 MobiDBLite consensus disorder prediction 353 367 - -
Spst5g01004 373 CDD STKc_IRAK 61 320 - -
Spst5g01004 373 MobiDBLite consensus disorder prediction 353 373 - -
Spst5g01004 373 Coils Coil 332 352 - -
Spst5g01004 373 FunFam serine/threonine-protein kinase PBS1-like 37 130 - -
Spst5g01004 373 FunFam calcium/calmodulin-regulated receptor-like kinase 1 131 340 - -
Spst5g01004 373 Pfam Protein tyrosine and serine/threonine kinase 57 317 IPR001245 GO:0004672|GO:0006468
Spst5g01004 373 ProSiteProfiles Protein kinase domain profile. 55 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01004 373 Gene3D Phosphorylase Kinase; domain 1 40 130 - -
Spst5g01004 373 SUPERFAMILY Protein kinase-like (PK-like) 53 334 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01004 Spst-Chr5 9738446 9742488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01004 48 317 Receptor kinase-like Gene Family AT3G19300 44.203 1.29e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Spst5g01004 PK_Tyr_Ser-Thr 5.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01004 - - gmx:100799586 623.239