Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00993 ATGGTTTCCCCGGAAAACACCAATTGGCTCTTCGATTACCCGTTGATCGATGATGATATTACCGTCGGCGATGGCTCCTTCACCGTATCCGCATCCGCCTTCTCCTGGCCTCCACCTCCCTCCAATGTCAGTGTTGAAATTGATGCTTCACTCGGGGATTCTGATGGCCTCAAAGATCCTGCTTTGAAGAAGAGGGGGAGATCTGATTCGTGTACTGCTTCTAGCTCTAAGGCATGTCGGGAGAAGTTGCGAAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGATAAGGCTGCCATTCTGATTGATGCTGTCAGAATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGACTCAAATACGAATCTTCAAGAGAAGATTAAAGAGTTAAAGTCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGTAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAACCTGCTTTCTTGCCACCCCCTCCTGCAATTCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCGGGCAACAAGTTAGTGCCTTTCATCAGTTATCCGGGTGTTGCCATGTGGCAGTTTATGCCTCCGGCTGCCGTGGATACATCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 702 0.49 MVSPENTNWLFDYPLIDDDITVGDGSFTVSASAFSWPPPPSNVSVEIDASLGDSDGLKDPALKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKDSNTNLQEKIKELKSEKNELRDEKQRLKVEKEKLELQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00993 233 Gene3D - 75 153 IPR036638 GO:0046983
Spst5g00993 233 SMART finulus 78 129 IPR011598 GO:0046983
Spst5g00993 233 CDD bHLH_AtILR3_like 77 152 - -
Spst5g00993 233 Coils Coil 120 175 - -
Spst5g00993 233 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Spst5g00993 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Spst5g00993 233 FunFam Transcription factor bHLH104 75 156 - -
Spst5g00993 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
Spst5g00993 233 PANTHER BHLH TRANSCRIPTION FACTOR 4 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Spst5g00993 233 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00993 Spst-Chr5 9610213 9612025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00993 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.667 7.55e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00993 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00993 - - gmx:100801742 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00993 5 9610213 9612025 Spst5g00993 5 9610213 9612025 ECH
Spst5g00993 5 9610213 9612025 Spst11g00778 11 31518819 31522591 PCT