Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00985 ATGAATTCAGAACAAAGTGTGGGGAAGAAGAGTTGGCTACCATTTAATCTTTCCCATTCCGCTCGAAGGAGAAGAGCCCGATCCCGAGGATGTCCTCCAAATTCTGCCCAACGTTTACATACACCAGCTTTTAACGATTTTTGTTATCTTCTTGTAAAACTCTGTCGAGCCCAGAATGTTCCAATGAGCAGTAAAAAGCGTCTTGCAAGAATTGCATGCAAATTAATAGCTCTGCATTTGAAAGAATATTACAAAGAAGAAGTCAAATATTGTAATTTTGTCATAACATTTTCCATCCGGTTGATTGGATTTTTTAAAGTGACACATTCTTGTTTGGTTGCTAATGTTCATAATAAAGAAAAAGGCACAAGGTGTCTATTTTATTTCAAAACTTCATTGCTTGGTGGTGGAAATGCGCAAACAGAGACTGGAACAAGCTTCGTCCATCACCAGATCACTGTGAATATTGGGGAGGACGTGGCAGACAAGGTAGTAACATTTGCTAAAAGATGCTGTCAAACTGTTTGCGTACTTTCTGCTATGGGTTCCTTATCAAGTGTTGTCCTTCGCATTCCATGTACTGATATTGTGAAGTGGGAGGGGCACATTGGAATTTTGTCACTATCTGGAAAATATACCTTCAACCCTGGTGAGGATGATGCACATGACGTGCATAACTGGTTGAACCTTTCACTAACTCATCATAATGGAAATATTTTTGGAGGTTCAGTTTGTGGTCCAATGATTGCGGCAACCCCTGTTTATTTAAGTCTTGCCAGTTTCAAATTAAAAAGTACGAAAAAAATGAGATGGGACGTAGCTGAGTCTGCTGTCGAATATCCAATGGAAGGCGGCAAACAGAGTGGCCATTCACCAACATCTGGACTTTTTCCAACTACTGATAAACTACCAGAGAGTGACACTCGTAAACAACAAAAGAAAGTGTGTTCTGAAACAACTGGTGAACCACAAGAGGAACCTAGTTCTGAAACAACTGATTAA 1002 0.3982 MNSEQSVGKKSWLPFNLSHSARRRRARSRGCPPNSAQRLHTPAFNDFCYLLVKLCRAQNVPMSSKKRLARIACKLIALHLKEYYKEEVKYCNFVITFSIRLIGFFKVTHSCLVANVHNKEKGTRCLFYFKTSLLGGGNAQTETGTSFVHHQITVNIGEDVADKVVTFAKRCCQTVCVLSAMGSLSSVVLRIPCTDIVKWEGHIGILSLSGKYTFNPGEDDAHDVHNWLNLSLTHHNGNIFGGSVCGPMIAATPVYLSLASFKLKSTKKMRWDVAESAVEYPMEGGKQSGHSPTSGLFPTTDKLPESDTRKQQKKVCSETTGEPQEEPSSETTD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00985 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 262 - -
Spst5g00985 333 CDD DUF296 150 261 IPR005175 -
Spst5g00985 333 Gene3D - 149 278 - -
Spst5g00985 333 ProSiteProfiles PPC domain profile profile. 144 283 IPR005175 -
Spst5g00985 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 262 IPR005175 -
Spst5g00985 333 MobiDBLite consensus disorder prediction 303 320 - -
Spst5g00985 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 304 IPR039605 GO:0003680
Spst5g00985 333 MobiDBLite consensus disorder prediction 281 333 - -
Spst5g00985 333 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00985 Spst-Chr5 9527409 9530045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00985 144 261 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 42.149 1.29e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00985 - - pvu:PHAVU_005G127900g 194.512