Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00962 ATGTTATTGTTTTTCCCTTCCAGGCCAGAATATGGAGAGATTGAACGTATTGTACATGCTGTAATAAAAACATTGGGCCATCAATTCTCTGGGTTTGTGGATGATCTTATTGGAATGCAACCACGTGTTCAAGCATTAGAAGATAATTTAAGATTAAATTCAAACAGTGATAATATTCAAGTTTTAGGAATTTGGGGAATGAGTGGAATAGGAAAGACGACTCACGCTACTGTTTTATATGATAAAATCTCTCACAGGTTTGATGCTTCTTGTTTTATTGAAAATGTGAGCAAACTTTATAAAGATGGTGGCAATACTGCTGTACAGAAACAAATTATTCATCAAACTTTAGATGAAAAAAATCTGGATGTATACAGTCCTTTTGAAATAGCAGGGATTGTAAGAAATAGGCTCCACAACATAAAGGTTCTTGTAGTTCTTGACAATGTTGATCAATTAGAGGAACTACAGGAATTGGCAATAAATCCTAAATTGCTTTTCAAAGGAAGTAGAATGATTATTATCACAAGGGATGAGCATATTCTGAAAGTGTATGGTGCTCATGTAATACACAAGGTTTCACTTTTGAATGATCACGATGCTCGTAAATTGTTTTATACAAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTAGTTGTGTGGAGTTGATTCCTGAGGTACTCAAATATGCCCAATGTCTTCCATTGGCAATTAGAGTTATGGGTTCTTTCTTGTGCACTCGAGAGGCTGATGAATGGAGGGATATCTTGAATAGATTAGAGAATAGTCCAGATAATAAAATTATGAACGTACTTCAAATAAGTGTTGATGGATTAGAATACGAGGAAAAAGAAATATTTTTACACGTTGCTTGTTTTTTTAAAGGGGAGAGGTTGGATTATGTTAAGCGAATTCTAGACTGCTGTGGATTATACCCTCTCATTGGAGTTAAAAGACTGATTGAAAAATCACTCATCACTATCAGAGATCAAGAAATTCTTATGCATGACATGTTACAAAATTTGGGAAAGAAAATGGTTCGCGACCGATCTCCCGAAGAACCGGGATCACGGAGTAGAATATGGCTTTATAAAGACTTCTTTCACGTTTTGACCACAGAAACGGGTACAGAAAATGTGAAAGCCATAGTTCTGAGTCAAAAAAGAAAAAACTCGGAATACAATGTTAATGGATTGTCAAAAATGAAGAGGCTTACATTACTCATATTATATCACAGTAAATTTTCTGGAAACCTCGATTATCTTTCTGACAGGTTGCGATATCTTTTGTGGCATGACTATCCTTTTAGTTCTCTGCCCCCTTATTTTACAGCCTCTAATCTGGTGGAATTGAATATGCCTAATAGTCGCATCAAATATTTATGGGAAGGTAGAAAGGTACCATAA 1404 0.3533 MLLFFPSRPEYGEIERIVHAVIKTLGHQFSGFVDDLIGMQPRVQALEDNLRLNSNSDNIQVLGIWGMSGIGKTTHATVLYDKISHRFDASCFIENVSKLYKDGGNTAVQKQIIHQTLDEKNLDVYSPFEIAGIVRNRLHNIKVLVVLDNVDQLEELQELAINPKLLFKGSRMIIITRDEHILKVYGAHVIHKVSLLNDHDARKLFYTKAFKSEEQSSSCVELIPEVLKYAQCLPLAIRVMGSFLCTREADEWRDILNRLENSPDNKIMNVLQISVDGLEYEEKEIFLHVACFFKGERLDYVKRILDCCGLYPLIGVKRLIEKSLITIRDQEILMHDMLQNLGKKMVRDRSPEEPGSRSRIWLYKDFFHVLTTETGTENVKAIVLSQKRKNSEYNVNGLSKMKRLTLLILYHSKFSGNLDYLSDRLRYLLWHDYPFSSLPPYFTASNLVELNMPNSRIKYLWEGRKVP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00962 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 288 IPR027417 -
Spst5g00962 467 Pfam NB-ARC domain 55 272 IPR002182 GO:0043531
Spst5g00962 467 Gene3D Ribonuclease Inhibitor 324 464 IPR032675 -
Spst5g00962 467 SUPERFAMILY "Winged helix" DNA-binding domain 265 370 IPR036390 -
Spst5g00962 467 Pfam Leucine Rich Repeat 446 463 IPR011713 -
Spst5g00962 467 Gene3D - 32 190 IPR027417 -
Spst5g00962 467 Gene3D - 195 279 IPR042197 -
Spst5g00962 467 PRINTS Disease resistance protein signature 61 76 - -
Spst5g00962 467 PRINTS Disease resistance protein signature 230 244 - -
Spst5g00962 467 PRINTS Disease resistance protein signature 137 151 - -
Spst5g00962 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 460 IPR044974 GO:0006952
Spst5g00962 467 SUPERFAMILY L domain-like 396 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00962 Spst-Chr5 9099424 9101025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00962 46 465 WRKY Transcription Factor Family AT5G45050 30.512 4.79e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00962 - - vra:106778604 716.842