Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00955 ATGTACAACCGTAGATTCAACACACCAATACACGTGGCTGACCCAGATGAGGTCGAACCAGAAGCTGGGCCTGCTTCTCCTTCTTCAGGTGACGACACTAAAACTGAAGCACCGTCACCCAAGAAAAGGAGTGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACGTATCCACCGTCTGATTCATGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCCCCTTACCCAAGGGGATATTACCGATGCAGTAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGCGAAGCCGTGTGGACCCCACAAAGCTCATAGTCACCTACGCCAACGACCACAACCACTCCATCCCCCTCCCAAAATCCAATTCCACCGCCGCCTCCTCGCCGGCCGAGTCTGCCGCTAGGTTCCCGCCGGAGGAGGAGATGGCCGTGTTCGCAACTCACTCCGACTTTGAACTCGCCGGTGATTCGGCGGTTCTGCTCAGCCACCACCACTTCCGGTGGTTCGATGACGTGGCCTCTACGGGTGTCCTCGAGAGCCCAATCTGTGGCGAGGTGGATGACGTGGCGATGCCGATGAGGGAGGAGGATGAGTCGCTCTTCGCCGATCTAGATGAGTTGCCGGAATGTTCGGTGGTTTTCCGGCGGAGGAATATTCCGAGGAGCAGCGCGATCCGGTGCGGCGGCATCACAAGATAA 741 0.5668 MYNRRFNTPIHVADPDEVEPEAGPASPSSGDDTKTEAPSPKKRSEMKKRVVTIPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYANDHNHSIPLPKSNSTAASSPAESAARFPPEEEMAVFATHSDFELAGDSAVLLSHHHFRWFDDVASTGVLESPICGEVDDVAMPMREEDESLFADLDELPECSVVFRRRNIPRSSAIRCGGITR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00955 246 MobiDBLite consensus disorder prediction 126 145 - -
Spst5g00955 246 FunFam WRKY transcription factor 65 57 131 - -
Spst5g00955 246 ProSiteProfiles WRKY domain profile. 71 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00955 246 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 23 226 IPR044810 GO:0003700
Spst5g00955 246 MobiDBLite consensus disorder prediction 1 75 - -
Spst5g00955 246 MobiDBLite consensus disorder prediction 128 144 - -
Spst5g00955 246 Gene3D WRKY domain 58 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst5g00955 246 SUPERFAMILY WRKY DNA-binding domain 66 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst5g00955 246 Coils Coil 244 246 - -
Spst5g00955 246 SMART WRKY_cls 70 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00955 246 MobiDBLite consensus disorder prediction 35 52 - -
Spst5g00955 246 Pfam WRKY DNA -binding domain 72 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00955 Spst-Chr5 8980459 8982297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00955 16 233 WRKY Transcription Factor Family AT3G58710 50.628 9.97e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst5g00955 WRKY 7.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00955 - - vra:106778551 446.817