Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00947 ATGTCAGGAGTGGGACCTCTCTCGCAGGATTGGGAACCAGTGGTGCTCCGCAAGAAAGCCCCCACCGCTGCCGCCCGCAAGGATGAGAAAGCCGTCAACGCTGCTCGCCGCACTGGCGCCGAAATCGACACCATCAAAAAATATAATGCTGGAACAAACAAAGCTGCATCTAGTAGCACTTCTTTGAACACTAAGAGGCTGGATGATGATACAGAGAATCTTGCTCATGATCGTGTACCAACTGAACTCAAGAAAGCCATAATGCAGGCCCGGATGGACAAGAAACTAACTCAGGCTCAGCTTGCTCAATTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGCAAAGCCATTCCAAACCAACAGATAATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGAGGCAAGAAATGA 429 0.5012 MSGVGPLSQDWEPVVLRKKAPTAAARKDEKAVNAARRTGAEIDTIKKYNAGTNKAASSSTSLNTKRLDDDTENLAHDRVPTELKKAIMQARMDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00947 142 Coils Coil 87 107 - -
Spst5g00947 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Spst5g00947 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Spst5g00947 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Spst5g00947 142 CDD HTH_XRE 85 135 IPR001387 -
Spst5g00947 142 FunFam Multiprotein bridging factor 1 71 142 - -
Spst5g00947 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Spst5g00947 142 MobiDBLite consensus disorder prediction 52 73 - -
Spst5g00947 142 SMART mbf_short4 86 141 IPR001387 -
Spst5g00947 142 Gene3D - 71 142 IPR010982 GO:0003677
Spst5g00947 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00947 Spst-Chr5 8901692 8904364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Spst5g00947 MBF1 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00947 K03627 - gmx:100500420 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00947 5 8901692 8904364 Spst5g00947 5 8901692 8904364 ECH