Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00945 ATGGATGAGAGAATTTGCATAACTGAGGAAGACAAGATTGAAAGTAGCAAAATCTCTTGTGCAAGTCTTGGAAGAAAACGTTCGTTCTTCGATTTGAATGAAGAAGCTGTGGATGATGGAGATGGTAGCACCAGTGATGACCCCACCAGTAACAATGACATATCATCTCAAGAGGGTAATTTGAGTAGTAATAATAACTCTAGTGAAGAAGGGAAAGAGCGTGCAACTACGGTTAGGCAATATGTTCGATCCAAAATGCCAAGACTCCGTTGGACTCCTGATCTTCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATTTACAGATGTATCGAAGTAAAAAGCTTGATGAATCTGGCCAAGTTTTATCCCAGAATAGGTCAATGCAAGGAAGGCATAGTATTTTCGATATGTACGGAAGACTTAATGCCCCACGACACTTTGGGGTTGACACCAGAAATTATGTACCATCATCTCTGCTCATGGAACAATCACCTTATCAAATCAGTGCTCATGGCTCCTCAAGATTACACCCAACACAGCTTTTCAATAATCACATGATGATAAGATCAAGTTCAATGTGGGATAAAGATTTGTGTAATTATCAGTACCAACGTAGTTCTTGCAGTACTAACTTCACTGGCCATGCGAAGTTTGATGCTGAGGTTCATGATGTGAAAAATCGAATGCCAGAGTTCCTAAACCAGGTTCAAGTATGGAGACAAGGTGAAGTGAAAGATCAACTAGAAAGTTTGAATGAGAAGAAAGGGTGTTCAAGTTTCTGGGAGCTGAATTCAAGTCAAGATTCGAGAAACATTGTTAGAGATCAGCATGTGAAGAGAGATGCATCAGCAAGTGAACAAGAAATTAACACCAGACTCTCTCTTTCATTGTTCACTTCCTCGTCTTCAAATTCATCACAGCAAGCACGATGTAGTGAAAATCATAAAGAGGATAGCCATGTTGAGAGTTTTTGTTTTCAAAATTATGCAGCAAGGAGTCGTTTGGGCTGA 1095 0.4046 MDERICITEEDKIESSKISCASLGRKRSFFDLNEEAVDDGDGSTSDDPTSNNDISSQEGNLSSNNNSSEEGKERATTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRSMQGRHSIFDMYGRLNAPRHFGVDTRNYVPSSLLMEQSPYQISAHGSSRLHPTQLFNNHMMIRSSSMWDKDLCNYQYQRSSCSTNFTGHAKFDAEVHDVKNRMPEFLNQVQVWRQGEVKDQLESLNEKKGCSSFWELNSSQDSRNIVRDQHVKRDASASEQEINTRLSLSLFTSSSSNSSQQARCSENHKEDSHVESFCFQNYAARSRLG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00945 364 MobiDBLite consensus disorder prediction 34 77 - -
Spst5g00945 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Spst5g00945 364 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Spst5g00945 364 Gene3D - 86 143 - -
Spst5g00945 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 64 237 IPR046955 GO:0003700
Spst5g00945 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Spst5g00945 364 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
Spst5g00945 364 MobiDBLite consensus disorder prediction 43 71 - -
Spst5g00945 364 FunFam Myb family transcription factor 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00945 Spst-Chr5 8876628 8879955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00945 78 155 G2-like Transcription Factor Family AT2G42660 72.289 3.98e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst5g00945 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00945 - - vun:114183967 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00945 5 8876628 8879955 Spst5g00945 5 8876628 8879955 ECH