Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00940 ATGGACTCCATCGCTGGAGCTCCGCCTCACGCAGCCACCCCTCCACTGTCTCGACCGACACCGTTCCCCGGCCGGGAAGACTGCTGGTCGGAGGAAGCCACGTTCACGCTCATCGAGGCATGGGGCGACCGCCACCTCGAACTCAACCGCGGTAACCTACGCCAGAGGCACTGGCAGGAGGTCGCCGACGCCGTCAACGCTCGCCACGGTCACGCCGGCGCCAGGGCCCGCCGCACCGACGTGCAGTGCAAAAACCGCATCGACACGCTAAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGACTCCGGTGATTCCGCCACCGCATGGCCTTTCTTCCTCCGCCTCGATTACCTTATCGGCGACAATTTCCCGGCGAAGAGGCCCTCCCCGCCGGAGGCCACCTCCGCCGATCGACGGAGCACTCCTCCGGCGAAGTCCCCAGCGTGGGCCCTCATTCCGGTCGGTCCTCGATCCCGCTCGCTGAAGCGGCCGGCGCCGGTAGCGCCGGCAGCAGAGAGTGTCGCAGACTCGTACTTCCGGCGGAATTTCTCGGTTTTTGCGGCGGCCGCCGCGGCCGCCGCCGAGGCCGATAGCGATAATTCGAACGGTTCTAAATGGAGCAGCGGGAGTGAGAAGAGAGAGAAGAAGAAAAGAGGAAGGGATTGGGAATTTGGTTACCGAGAGGTTGCAGAAGCATTGGAGAGGTTTGGGGAGATTTATGAGAGAGTTGAAGAGGCGAAACAGAGGCAAATGGTGGAGTTGGAGAAACAGAGAATGCAGTTTGCTAAGGATTTGGAAACCCAGAGAATGAAACTCTTCATGGAAACTCAGCTTCACTTGCAAAAAATGAATCGCTCCAACTCCAAACGTTCCTCTGCAACTGGTTAG 894 0.5951 MDSIAGAPPHAATPPLSRPTPFPGREDCWSEEATFTLIEAWGDRHLELNRGNLRQRHWQEVADAVNARHGHAGARARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATAWPFFLRLDYLIGDNFPAKRPSPPEATSADRRSTPPAKSPAWALIPVGPRSRSLKRPAPVAPAAESVADSYFRRNFSVFAAAAAAAAEADSDNSNGSKWSSGSEKREKKKRGRDWEFGYREVAEALERFGEIYERVEEAKQRQMVELEKQRMQFAKDLETQRMKLFMETQLHLQKMNRSNSKRSSATG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00940 297 MobiDBLite consensus disorder prediction 199 221 - -
Spst5g00940 297 Gene3D - 29 96 - -
Spst5g00940 297 Pfam Myb/SANT-like DNA-binding domain 26 118 IPR044822 -
Spst5g00940 297 FunFam trihelix transcription factor ASIL2 29 96 - -
Spst5g00940 297 MobiDBLite consensus disorder prediction 1 25 - -
Spst5g00940 297 MobiDBLite consensus disorder prediction 128 167 - -
Spst5g00940 297 Coils Coil 231 262 - -
Spst5g00940 297 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 17 289 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00940 Spst-Chr5 8796711 8797604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00940 180 296 Trihelix Transcription Factor Family AT3G14180 38.655 5.56e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst5g00940 Myb_DNA-bind_4 4.1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00940 - - gmx:100784918 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00940 5 8796711 8797604 Spst5g00940 5 8796711 8797604 ECH