Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00917 ATGAGTTACTTCGGCGACGATCACGACCAGGGTCCGTTCGGAACATTCCAGAACCAAAAGGACTTCAACCAGAGGATACTAATCACCGCCGTAGTTTCCCTAACAGTGGTGTTAGTCTTGGTGTTTGCACTTCACATCTACGCAAGGTTTTTTCTGAGGCGTCAAACTCGCCGCAGAAGCGCCATATACCAACTCAACCTCAACATGGCTCACCCTCACGGCGAACGACCAAACACTGGACTCGATCGTGCCCTAATCACCGCTCTCCCTACCTTCCCCTTCAAACTGCAAAACGACGCCGTTGAGTGTGCCGTCTGCTTGAGCGTTCTGGGAGACGGAGAACACGTCAGACTTCTTCCTAATTGTAAACACACCTTCCACGTCGGCTGCATCGACACGTGGCTCGCCTTGCATTCCACGTGTCCTCTTTGTCGAACCAAGGCCGAACCCCTCCAGCTTGAACCGGTCCAGCGCGAGGGCCCCACCGGGTTCGCCTTCCCCACCGCCCCGCTATCTTTGGACACCGTGGAGGGCACTTCGGACGGTGCCAATGGCTCACCTAAAATCAACGGCTCCAATTCAAGGTTGAGTTCGTTTCGAAGGATTCTTAGTAGAGACAGATCGTCGAGGAGGATACAACCTTCTACGCTTGATGCCGTTGAACAAGACTTAGAGACACAGTGA 684 0.5365 MSYFGDDHDQGPFGTFQNQKDFNQRILITAVVSLTVVLVLVFALHIYARFFLRRQTRRRSAIYQLNLNMAHPHGERPNTGLDRALITALPTFPFKLQNDAVECAVCLSVLGDGEHVRLLPNCKHTFHVGCIDTWLALHSTCPLCRTKAEPLQLEPVQREGPTGFAFPTAPLSLDTVEGTSDGANGSPKINGSNSRLSSFRRILSRDRSSRRIQPSTLDAVEQDLETQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00917 227 CDD RING-H2_EL5-like 102 145 - -
Spst5g00917 227 MobiDBLite consensus disorder prediction 167 227 - -
Spst5g00917 227 SMART ring_2 103 144 IPR001841 -
Spst5g00917 227 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Spst5g00917 227 Pfam Ring finger domain 102 145 IPR001841 -
Spst5g00917 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 167 - -
Spst5g00917 227 SUPERFAMILY RING/U-box 96 149 - -
Spst5g00917 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 150 IPR013083 -
Spst5g00917 227 FunFam E3 ubiquitin-protein ligase ATL6 69 150 - -
Spst5g00917 227 MobiDBLite consensus disorder prediction 213 227 - -
Spst5g00917 227 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00917 Spst-Chr5 8543048 8543731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00917 4 218 C3H Transcription Factor Family AT2G42360 46.460 1.09e-54 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00917 K19038 - gmx:100780265 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00917 5 8543048 8543731 Spst5g00917 5 8543048 8543731 ECH