Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00902 ATGCTAGAAAAGATGGATGATGGAGAAATTTCAAATGCTTTTCCTCTTCAGAACCCGTCAACTGGTGCATCTAACCAACCTCCTGTTTTGAAGAGGAAGAGAAACCTTCCTGGAAATCCAGATCCTGAAGCTGAGGTCATAGCCTTGTCGCCGAAGACTCTGATGGCCACAAACAGGTTCGTGTGTGAAATTTGTCTCAAGGGTTTCCAAAGGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGATCAAGCAAAGAAGCAAGGAAGAGAGTTTATGTGTGTCCAGAGAAAACTTGTGTCCACCACCACCCTTCAAGGGCTCTGGGAGACTTAACTGGGATAAAAAAACACTTCTGCAGAAAGCACGGTGAGAAAAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGTTTCATCACTCACAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCTAGAGTGAACGCAGCATCAAACATTAGCAACTACAGCATCATGCAAAATCCCCTAGGTCCTAGCATGGCAACCCATTTTTCGTCATTTTTTAAGCCAAATTCATGCCCTGAGGAGCCAACCCCAGGTAGTCAAACATCCAAGGGGCTATCCCTTTGGATGACTCAAACACAGGCTCATGAAACAATTGCTAACAACAATTTGCATGAATTTCATCAACTTGGGTCTGCTACAAGCCCGACCTCAATTTATGGTGGTGGTGGGAATCCACTTGCTCCTTGCTCAAATCCACCATCCTCTAATTATCAGCTGAATTGGGTGTTTGGGAATAAACTCTCCTCCAATGGAAATCAAGATCTATCCAGCACTGCTTCACTTCCACTAGTCAATGATATTGTCAAGGATAACCCAAACCTGCAACTCATAAGTGTTCCTTCCTTGTATAGTTCACAACACCAATCCCATCAAACAAACTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACATCATCGGACCCATCATTATTCCTTGGGAGCATTGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGTCTGTACGGTTCAAGTTCAGTACTCACGAGTTATGATGCAGATAATAATTATTCAGGTGATTTGTCACAAATGCCCCCTTCAAAACGACGGCACTTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAACCAAGGGATGGATTTAATTTGA 1383 0.444 MLEKMDDGEISNAFPLQNPSTGASNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEARKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNISNYSIMQNPLGPSMATHFSSFFKPNSCPEEPTPGSQTSKGLSLWMTQTQAHETIANNNLHEFHQLGSATSPTSIYGGGGNPLAPCSNPPSSNYQLNWVFGNKLSSNGNQDLSSTASLPLVNDIVKDNPNLQLISVPSLYSSQHQSHQTNSANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGLYGSSSVLTSYDADNNYSGDLSQMPPSKRRHLQNEESAWGQTRDFLGVGGANHLPPFINQGMDLI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00902 460 Gene3D Classic Zinc Finger 93 184 - -
Spst5g00902 460 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Spst5g00902 460 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Spst5g00902 460 MobiDBLite consensus disorder prediction 13 28 - -
Spst5g00902 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Spst5g00902 460 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Spst5g00902 460 FunFam protein indeterminate-domain 12-like 39 107 - -
Spst5g00902 460 MobiDBLite consensus disorder prediction 1 44 - -
Spst5g00902 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 444 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00902 Spst-Chr5 8429020 8431794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00902 27 444 IDZ Gene Family AT1G03840 51.392 1.48e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g00902 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00902 K25870 - gmx:100778666 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00902 5 8429020 8431794 Spst5g00902 5 8429020 8431794 ECH