Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00900 ATGACTCAGTGCAGTAACCCTGAAAACAACCATACCATCATTGTGGAGAGGCACAAAGATAGCTTGATCAGAACATGTCCTACATGTGGTCATCATATCAAGTGCCAGGAGCAGGCTGCTGGAATTCATGACTTGCCTGGACTTCCTGCTGGAGTGAAGTTTGATCCTACTGATCAAGAGATTCTTGAGCATTTGGAAGCGAAGGTGCGGTCTGATATTCATAAGCTTCATCCGTTAATTGATGAGTTCATCCCTACTCTTGAAGGGGAAAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGACCTTCCAAAGCCTACACGACTGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCTGATGGCAGTGAGACACGGTGGCATAAAACAGGTAAGACTAGGCCAGTTTTCATCAGTGGCAAGTTAAAAGGGTACAAGAAAATTCTTGTACTTTACACTAACTACAGAAAACAAAGGAAGCCTGAGAAGACAAACTGGGTCATGCATCAGTATCACCTTGGCAATAATGAAGAGGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTTTTCTATCAAACACAACCTAGACAATGTGGTTCACTCATGAAAGACTCATATTCTACAAAACTAAATGGTGAAAGTGTGCATGAGGTAACTAATCATAAAAACACTGGGTTTGTCGAGTACTATAATAATTCTTTTGTATCCTTTGATCAAGGGGACCAGCATAGGTCTAGCAATGCACAACTAGTCACCCATTTCCCTGTCCATGATGGTACTACTTTCATTCCTTGA 840 0.4274 MTQCSNPENNHTIIVERHKDSLIRTCPTCGHHIKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVFISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSYSTKLNGESVHEVTNHKNTGFVEYYNNSFVSFDQGDQHRSSNAQLVTHFPVHDGTTFIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00900 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Spst5g00900 279 MobiDBLite consensus disorder prediction 121 143 - -
Spst5g00900 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Spst5g00900 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Spst5g00900 279 FunFam NAC domain-containing protein 73 57 211 - -
Spst5g00900 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 19 237 IPR044799 GO:0003700
Spst5g00900 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Spst5g00900 279 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00900 Spst-Chr5 8420187 8421741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00900 24 224 NAC Transcription Factor Family AT4G28500 79.703 4.60e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g00900 NAM 3.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00900 - - gmx:100791648 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00900 5 8420187 8421741 Spst5g00900 5 8420187 8421741 ECH