Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00899 ATGGTTCACTTTAACCAGCAAGTACTACTGTTTCTGCTTCTCTTTCTCTCTCTAAACCCCACTCTCTGTCTAAACCAAGACGGTCTCTTCCTCCTCCAGGCCAAGCTCCAACTCTTCGACCCCACAAACGCCCTCTCCGATTGGAACCTCCGTGACGCCACTCCATGCAACTGGACCGCCGTCACATGCGACGCCACCGCCCGCGTCGCCCACCTCAACCTCTCCAACCTCCGACTCTCCGGCCCCGTTCCCGCCGCCGCCCTCTGCCGCCTCCCCTCCCTCGCCAACCTCTCCCTGGCCTACAACTACCTCAACGCCACCCTTCCCGCTGCTGCGTTCTCCGCCTGCGCTGCCCTCCGCAGTCTCGACCTTTCCCAGAATCTCATCTCCGGACCCATCCCCCCCGCCCTCGCCCTCCTCCCAGACCTCCAAGCCCTCGACCTCTCCTCCAACAACTTCTCCGGCGATATACCGGCGACCTTCGGCCAGTTCCGGCAACTCCAAAGCCTCTCCCTCGTCAGCAACCTTCTCAACGGAATCATTCCCTCTTCCCTCGGCAACGTTTCCACGCTCAAAACGCTTCAACTCGCTTACAACGTTTTCAAGGCAGGTCCCATTCCTCCTTCTCTGGGCAACCTCTCGAATCTCGAGGAGCTTTGGCTCGCAGGGTGCAACCTTATGGGCCCCATTCCGCCTTCTCTGGGGAACTTGGCGAAGCTTACGAATCTCGATTTGTCCATGAACAACCTCGTCGGGAACATACCTGAACAACTCGTGTCAGGTTTGCGCAGCATTGTACAAATCGAACTCTACCAGAACGCGCTCTCCGGCACGTTGCCACGCGCCGCGTTCGCCAACCTTACTAACTTGGAACGGTTCGATGCCTCCACGAACCAGTTGACCGGGACGATTCCAGACAAGTTGTGCGGGTTGAGGAAACTCGGCTCGCTCATCCTGTACGCTAATAAGCTCGAGGGGAATTTGCCGGAGAGTATAGTGAATTCCGAGAACTTGTACGAGTTGAAGTTGTTCAACAACTCCCTCACTGGGTCGTTGCCCAGTGGGTTGGGTGGAAACTCGAAATTACAGAGTTTCGACGTTTCGTTTAACCGATTCTCCGGCGAGGTTCCGGCGGGGTTGTGCGGCGGAAGGGTGTTGGAGGAGCTGATTCTCATTTACAATTCGTTTTCCGGGAGGATCCCTGACAGTCTCGGGGAATGCAAGAGTTTGAGAAGGGTTCGGCTTAGGAACAATAACCTCTCTGGGGTTGTGCCCGAGGGATTATGGGGTCTGCCCCACTTGTATTTGTTGGAGCTTGTTGAGAACTCTCTTTCTGGGTCGATTGCTAATGCCATTTCCGGGGCGCGGAACTTGTCAAGTTTGTTAATTTCGGGTAATAATTTTTCTGGGTCGATTCCTGAGGGAGTTGGTGAATTATTTAATCTTGAAGAGCTTGTTGCTAATCATAATAGTCTTACTGGTCGAATTCCCACAAGTATGGTTAGGTTGAGTCAGTTGGATAGGCTTGTTCTCAGAGACAATCATCTTTTTGGAGAGATTCCTTTTGGCGTTGGTGGTTGGAAGAAGCTCAATGAACTTGATTTGGCGAATAATAGATTAGATGGGAGTATTCCTAAGGAGTTATCGGACTTGCCTGTGCTTAATTATCTTGATCTTTCTGGTAATCGGTTATCTGGTGCAATTCCAATTGAGCTGCAGGATTTGAAGCTGAACTTGTTGAATTTGTCGAACAATCAGCTTTCTGGGGAGATTCCTCCTCTTTATGCCAACGAAAATTATAGAAAGAGTTTTCTTGGGAATCCGAGTCTGTGTAGTTCTCTGTCTGCACTGTGTCCAAGCTTGGATGGGAATGAGAGCAAGAGCAGGAAATATGTGTGGATTTTCCGGTTCATATTTGTGCTTGCTGGGATTGTTTTAATTGTTGGGGTGGCTTGGTTCTACTTCAAATTCCGGAACTTCAAGAAGATGAAAAAGGGGTTTCACATTTCAAAGTGGAAATCGTTTCATAAGCTGGGGTTTAGTGAGTTTGAGGTTGTTAAATTGCTAAGTGAGGACAATGTTATAGGGAGTGGAGCTTCTGGGAAGGTTTACAAAGTTGCGCTGAGCAATGGCGAGATGGTGGCAGTGAAGAAATTGTTCGGAGCACCTAACATGGAAAATGGATCTGTTGATTCTGAGAAGGATGGATTTGAAGTTGAGGTTGAAACACTGGGTAAGATTCGGCACAAGAATATTGTGAGATTATGGTGTTGTTGCAACAGTAAAGATAGCAAGCTCTTGGTTTATGAGTACATGCCAAATGGGAGCCTGGCTGATTTGTTACACAGTAGCAAGAAAGGTTTGTTGGATTGGCCCACAAGATATAAAATTGCAATTGATGCTGCCGAGGGGCTCTCATATTTGCATCATGATTGTGTCCCCCCTATTGTTCATAGGGATGTCAAATCGAGCAATATCTTGTTAGATGATGAATTTGGAGCAAAAGTAGCCGATTTTGGAGTTGCCAAAATTGTCAAGGGAGCCAACCAAGGGGCAGAATCCATGTCTGTGATTGCTGGATCTTATGGTTACCTTGCACCAGAGTATGCTTATACACTTAGGGTGAATGAAAAGAGTGACATATATAGTTTTGGTGTGGTAATTTTGGAGTTGGTAACTGGGAAGCCTCCTCTTGATCCAGAGTATGGTGAAAAGGATCTAGTAAAATGGGTTTACTCCACATTGGATCAGAAAGGACAGGATGAGGTGATTGATCCTTCTTTGGATATTCAATATAGGGAAGAAATGAGCAAGGTACTAAGCTTGGGGCTTCTTTGCACCAGCTCTCTTCCTATAACTCGCCCTTCAATGCGTAGAGTGGTGAAAATGCTGAAGGAAGTAACTGCACCTGCACTTCCCAAATCCTTAAGTGGAAAACTCTCTCCTTACTTCCAGGAAGAGGCCACTGATAATGATCACCAGGGAAGCATAGTTTGA 2997 0.4842 MVHFNQQVLLFLLLFLSLNPTLCLNQDGLFLLQAKLQLFDPTNALSDWNLRDATPCNWTAVTCDATARVAHLNLSNLRLSGPVPAAALCRLPSLANLSLAYNYLNATLPAAAFSACAALRSLDLSQNLISGPIPPALALLPDLQALDLSSNNFSGDIPATFGQFRQLQSLSLVSNLLNGIIPSSLGNVSTLKTLQLAYNVFKAGPIPPSLGNLSNLEELWLAGCNLMGPIPPSLGNLAKLTNLDLSMNNLVGNIPEQLVSGLRSIVQIELYQNALSGTLPRAAFANLTNLERFDASTNQLTGTIPDKLCGLRKLGSLILYANKLEGNLPESIVNSENLYELKLFNNSLTGSLPSGLGGNSKLQSFDVSFNRFSGEVPAGLCGGRVLEELILIYNSFSGRIPDSLGECKSLRRVRLRNNNLSGVVPEGLWGLPHLYLLELVENSLSGSIANAISGARNLSSLLISGNNFSGSIPEGVGELFNLEELVANHNSLTGRIPTSMVRLSQLDRLVLRDNHLFGEIPFGVGGWKKLNELDLANNRLDGSIPKELSDLPVLNYLDLSGNRLSGAIPIELQDLKLNLLNLSNNQLSGEIPPLYANENYRKSFLGNPSLCSSLSALCPSLDGNESKSRKYVWIFRFIFVLAGIVLIVGVAWFYFKFRNFKKMKKGFHISKWKSFHKLGFSEFEVVKLLSEDNVIGSGASGKVYKVALSNGEMVAVKKLFGAPNMENGSVDSEKDGFEVEVETLGKIRHKNIVRLWCCCNSKDSKLLVYEYMPNGSLADLLHSSKKGLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSSNILLDDEFGAKVADFGVAKIVKGANQGAESMSVIAGSYGYLAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPLDPEYGEKDLVKWVYSTLDQKGQDEVIDPSLDIQYREEMSKVLSLGLLCTSSLPITRPSMRRVVKMLKEVTAPALPKSLSGKLSPYFQEEATDNDHQGSIV 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00899 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Spst5g00899 998 SMART serkin_6 689 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00899 998 Pfam Leucine rich repeat 92 153 IPR001611 GO:0005515
Spst5g00899 998 Pfam Leucine rich repeat 529 587 IPR001611 GO:0005515
Spst5g00899 998 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Spst5g00899 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 979 - -
Spst5g00899 998 Pfam Protein kinase domain 691 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00899 998 Gene3D Ribonuclease Inhibitor 261 620 IPR032675 -
Spst5g00899 998 Gene3D Phosphorylase Kinase; domain 1 661 771 - -
Spst5g00899 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 233 966 - -
Spst5g00899 998 Gene3D Ribonuclease Inhibitor 203 260 IPR032675 -
Spst5g00899 998 Gene3D Transferase(Phosphotransferase) domain 1 772 974 - -
Spst5g00899 998 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Spst5g00899 998 ProSiteProfiles Protein kinase domain profile. 689 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00899 998 SMART LRR_typ_2 407 430 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 287 311 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 551 574 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 140 163 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 164 187 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 262 286 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 91 115 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 503 527 IPR003591 -
Spst5g00899 998 SMART LRR_typ_2 237 261 IPR003591 -
Spst5g00899 998 SUPERFAMILY L domain-like 44 377 - -
Spst5g00899 998 FunFam Receptor-like protein kinase HSL1 313 620 - -
Spst5g00899 998 FunFam Leucine-rich receptor-like protein kinase family protein 206 306 - -
Spst5g00899 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 188 - -
Spst5g00899 998 SUPERFAMILY RNI-like 304 598 - -
Spst5g00899 998 Gene3D Ribonuclease Inhibitor 21 202 IPR032675 -
Spst5g00899 998 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Spst5g00899 998 SUPERFAMILY Protein kinase-like (PK-like) 688 964 IPR011009 -
Spst5g00899 998 FunFam Receptor-like protein kinase HSL1 673 771 - -
Spst5g00899 998 ProSiteProfiles Leucine-rich repeat profile. 576 598 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00899 Spst-Chr5 8410950 8414140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00899 20 998 Receptor kinase-like Gene Family AT1G28440 58.877 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst5g00899 Pkinase 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00899 - - gmx:100778128 1549.64