Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00898 ATGGGCATTGATTACTACAAAATCCTTGAGGTCGATAGGAGTGCTACAGGAGAGGACCTCAAGAAGGCGTACAAGAGACAAGCCAAGAAATGGCACCCCGACAAAAATCTGAATTCGATGGAAGAAGCTGAATCGATGTTCAGACTAATATCTGAAGCGTACGCTGTGTTAAGTGATCCCAACAAGAGGGCAATTTTCGACAGGTATGGTGAAAATGGTGTTAAAGGTAAGCTGCCAACTGATGATGCTGGTGCTTCTGGTAGTGGTGGTTGTCGCGGTGGGGCAGGCGGAGCGACCCCTCAGAGTGCTGGTAATGGTTTTGGTGAGTCCTTTGGAAGTCCGGGCTCTGGTGGGGGTACGAGATCGAAGTCTTCTTCTAGGGGAAGAGGAGTAGACACCCATGCAAGCTATGGTGTTCCCCGAAAAGGAAAACCTATTCATAGGAACTTGGCCTGTACACTTGAGGAGTTATACAAAGGGACCACCAAAAGGTTGAGGATATCTCGGGATGTTGTTGATCTCGCTGGGAACTGTAGGCAGGTGCAAGAGATCGTGTCCATCGATGTGCAGGCTGGTTGGAAGAAGGGCACGAAGATCACTGTTCCCAAGAAGGGAAATGTAGAGCCAAATGTGACGCCAGCTGATATTGTTTTCACCATAGATGAAAAACGTCATGGGGTTTATACCAGGGAAGGATACAACCTTGTGGTTACCCAGAAGATATCTCTTTTAGAAGCCTTGACAGGTTACACTGTGAACTTGGTCACTCTTGATGGAAGAAACTTGACTGTGCCTATCAACCGAGTTATTCATCCTAGATATGAGGAGGTTATTGCAAGAGAAGGATTGCCTAACCCAAAGAACCCAACAAAGAAGGGAAGCTTGAAGATAAGGTTCTACATCATATTCCCAACCGAGCTCACTCTTCGTCAGAAGGACGTAATGAAGACACTTTTGCCTGCTTGA 966 0.4689 MGIDYYKILEVDRSATGEDLKKAYKRQAKKWHPDKNLNSMEEAESMFRLISEAYAVLSDPNKRAIFDRYGENGVKGKLPTDDAGASGSGGCRGGAGGATPQSAGNGFGESFGSPGSGGGTRSKSSSRGRGVDTHASYGVPRKGKPIHRNLACTLEELYKGTTKRLRISRDVVDLAGNCRQVQEIVSIDVQAGWKKGTKITVPKKGNVEPNVTPADIVFTIDEKRHGVYTREGYNLVVTQKISLLEALTGYTVNLVTLDGRNLTVPINRVIHPRYEEVIAREGLPNPKNPTKKGSLKIRFYIIFPTELTLRQKDVMKTLLPA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00898 321 FunFam DnaJ subfamily B member 13 225 305 - -
Spst5g00898 321 Gene3D DnaJ domain 3 123 IPR036869 -
Spst5g00898 321 CDD DnaJ 4 59 IPR001623 -
Spst5g00898 321 SMART dnaj_3 3 62 IPR001623 -
Spst5g00898 321 Pfam DnaJ C terminal domain 147 304 IPR002939 -
Spst5g00898 321 MobiDBLite consensus disorder prediction 71 142 - -
Spst5g00898 321 Pfam DnaJ domain 4 67 IPR001623 -
Spst5g00898 321 SUPERFAMILY HSP40/DnaJ peptide-binding domain 228 314 IPR008971 GO:0006457|GO:0051082
Spst5g00898 321 CDD DnaJ_C 144 307 - -
Spst5g00898 321 SUPERFAMILY HSP40/DnaJ peptide-binding domain 140 236 IPR008971 GO:0006457|GO:0051082
Spst5g00898 321 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Spst5g00898 321 SUPERFAMILY Chaperone J-domain 3 90 IPR036869 -
Spst5g00898 321 Gene3D - 145 224 - -
Spst5g00898 321 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 319 - -
Spst5g00898 321 MobiDBLite consensus disorder prediction 103 131 - -
Spst5g00898 321 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Spst5g00898 321 Gene3D - 225 305 - -
Spst5g00898 321 FunFam Dnaj homolog subfamily b member 142 223 - -
Spst5g00898 321 PRINTS DnaJ domain signature 24 39 IPR001623 -
Spst5g00898 321 PRINTS DnaJ domain signature 42 62 IPR001623 -
Spst5g00898 321 PRINTS DnaJ domain signature 6 24 IPR001623 -
Spst5g00898 321 PRINTS DnaJ domain signature 62 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00898 Spst-Chr5 8368201 8370571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00898 4 67 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.647 9.57e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00898 K09510 - mnt:21393813 354.755