Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00895 ATGCTGGCCGTGTCACCTTTGAGGAGCACAACAGATGGAGAGCAAGGGGAGATGGAGAGTTTCTCAATTGGGGAGGACTTTGCTGACCTTTCAGAAGGGAATTTGCTTGAAAGCATCGATTTTGATGATCTATTCATGGGAATCAACGGTGATGGAGATGTCTTGCCGGATCTGGAGATGGACCCTGAAATGCTTGCTGAGTTTTCCCTCAGTGAGGAATCAGAGATAGTCTCATCAGTTTCAGTGGCAAATAACACATCTGATAACAGTAATGGGAATAATACAGTTACTACAGAAAAACAAGATGAGGTTATAGTAACCAATTTTTCGTCAGATTCTGGTTCTAATTCGGGGTCTAGTGGGGAGGAGATAGCAAGCAAAAATAATGAATCAACTCATTCAGTGGCGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAACTCACTCAAGGAATAATCCTCAAGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGAATTGCACAGACGATTTGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGAATTTTGGAAATTATGGGAATTGACTGTCTAACCCGCCACAACATTGCCAGCCACCTTCAAAAATATCGATCGCATAGGAAACATTTGCTGGCGCGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAACAATTCATGGGTGCAGCAAGTGTAGGTAGAGGAGGAGGAGGAGCCAAGAGAGAAGTGAACCCTTGGCTTGCACCTACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCTTTACATGTATGGGGGCATCACACCATGGACCAGTCCTTCGTGCACATGTGGCCTAAACATCTACCATATACACCGTCGCCGGCAGCATGGCCACCGCGGACAGCTCCACCTCCGCCACCTCCAGACCCTCTTTATTGGCACCAACACCAACGGGCTCCAGACGCACCAACCCCAGGAACACCGTGTTTTCCACAGCCTCTGACAACCACGAGATTTGGCTCTCAAACTGTTCCAGGCATCCCTCCACACCATGCAATGTACCAAATATTAGATCCAGGAATTGGCATCCCAGCCACCCAACCACCACCTCGACCCCTCCTCGACTCTCATCCGTCAAAGGAGAGCATAGATGCGGCAATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGCCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 1308 0.4801 MLAVSPLRSTTDGEQGEMESFSIGEDFADLSEGNLLESIDFDDLFMGINGDGDVLPDLEMDPEMLAEFSLSEESEIVSSVSVANNTSDNSNGNNTVTTEKQDEVIVTNFSSDSGSNSGSSGEEIASKNNESTHSVAVNPSPKESEKGRKSSTHSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQFMGAASVGRGGGGAKREVNPWLAPTMGFPPMTPMHHFRPLHVWGHHTMDQSFVHMWPKHLPYTPSPAAWPPRTAPPPPPPDPLYWHQHQRAPDAPTPGTPCFPQPLTTTRFGSQTVPGIPPHHAMYQILDPGIGIPATQPPPRPLLDSHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00895 435 Gene3D - 160 221 - -
Spst5g00895 435 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 434 IPR044825 GO:0003700|GO:0045893
Spst5g00895 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 219 IPR017930 -
Spst5g00895 435 FunFam Two-component response regulator 159 222 - -
Spst5g00895 435 MobiDBLite consensus disorder prediction 79 166 - -
Spst5g00895 435 SUPERFAMILY Homeodomain-like 161 220 IPR009057 -
Spst5g00895 435 Pfam Myb-like DNA-binding domain 166 215 IPR001005 -
Spst5g00895 435 MobiDBLite consensus disorder prediction 79 139 - -
Spst5g00895 435 NCBIfam myb-like DNA-binding domain, SHAQKYF class 163 217 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00895 Spst-Chr5 8325744 8329111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00895 17 328 G2-like Transcription Factor Family AT5G44190 44.037 1.55e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst5g00895 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00895 - - gmx:100775671 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00895 5 8325744 8329111 Spst5g00895 5 8325744 8329111 ECH