Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00888 ATGAGCAGTGTCTGTGCCGAGCAGCACAAGTTTCACCCCTCTCACCAATTCCACTCTCCAAAGAAAACACTCAAAGAGATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGCGCCGCCGCTGCATGCGGCGGCTCAGACTTGTTCTCCGATGACACCATGCTGCAAAAGTTCCTCCCTTCCAACAACCTTGATGACTCCGATGAGGACGACCCTTACTCCTCCGACCACTTCCGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGTCACGACTGGACTGACTGCCCTTTTGCTCACCCTGGCGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTATCACTACTCAGGAACCGTGTGTCCTGAGTATCGCCGGGGAGGTTGCAGCCGTGGTGATGCATGTGAATACGCTCACGGTGTATTCGAGTGCTGGTTGCACCCTGCCAGATACAGAACAGAGGCCTGTAAGGATGGGAAGAACTGCAAGAGAAAGGTGTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTTCTCCTTCTTCAAATGAAATGTCATGCAAGAAGAACATTAACAAGCTCTTCAGCCATGCTTCAAGATCCAACAACAACAACTGTTGTTTGTTTTGCCACTGTGTTTCTTCCTGTTCTTCTTCTTCTTCCACTGCTTCTCCAACTTCAACACTCTTCAACATGTCGCATTACTCTCCACCGCTATCACCATCGTCCTCCTCCTCACCACCTCCTTCTCCGTTGAAACCCCGAAACGGGGTTTCTGTTTCTCCAATTTCCCGTTATGGTGCTGTAAATGTAAACCCTCATCATGGGGTGGTGAGTTACAAAGAATCGTTCGCTGAATTTGTGAACTCCTTGGAGAGTTTGAGTTTGAACGAGGGTTCTCCTGTTTCCAGTGCCAAACCACCGAACTTGCCTTGGCTTGATGTTTCTCTCAACTGTGAAGAACAGCAGCAACAACAATCGTTTATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGCAGCAGTTTATTTTTTCACCATCGTCCACTCCGACACCGACAGATGTTAAGTTTTGCAGAAACAAATTCATAGGCCACGACAACAAGGTTGTCGGTGCTGACTCTAATGTCCCAGATCTCGCGTGGGTGAATGATTTGCTGATGTAG 1185 0.4987 MSSVCAEQHKFHPSHQFHSPKKTLKEIDIPPRKLLTRRAAAACGGSDLFSDDTMLQKFLPSNNLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDACEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSPSSNEMSCKKNINKLFSHASRSNNNNCCLFCHCVSSCSSSSSTASPTSTLFNMSHYSPPLSPSSSSSPPPSPLKPRNGVSVSPISRYGAVNVNPHHGVVSYKESFAEFVNSLESLSLNEGSPVSSAKPPNLPWLDVSLNCEEQQQQQSFIASSFGCEDQQQQFIFSPSSTPTPTDVKFCRNKFIGHDNKVVGADSNVPDLAWVNDLLM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00888 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Spst5g00888 394 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Spst5g00888 394 MobiDBLite consensus disorder prediction 248 262 - -
Spst5g00888 394 Gene3D - 117 181 - -
Spst5g00888 394 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Spst5g00888 394 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Spst5g00888 394 MobiDBLite consensus disorder prediction 1 22 - -
Spst5g00888 394 PANTHER UNKEMPT FAMILY MEMBER 51 393 IPR045234 -
Spst5g00888 394 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Spst5g00888 394 MobiDBLite consensus disorder prediction 245 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00888 Spst-Chr5 8212387 8213571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00888 73 186 C2H2 Transcription Factor Family AT5G12850 65.217 1.22e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst5g00888 zf-CCCH 5.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00888 K23047 - gmx:100787049 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00888 5 8212387 8213571 Spst5g00888 5 8212387 8213571 ECH