Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00887 ATGCCTGCCCAGAAGCGCTCCCTCCCCGACTCTCTTGACGAAGGGGACACTTCACACCACAACCTCTTCCATTCTCGACATGCGAAGCACCAACAACAGCAACAACAGGACCAGTCGCACGAGCACGACGAGGATCACCATCATGAAGAGGAGGAACAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGGGGAAGGAGAAGAAGAAGAAGATGACGAGGAAGAAGAAGACGAAGAAGTAGAAGAAGCGGCGCATGATAACGACGACAAGGAAAAGCCACAGGATTCCGACGAAACCCCATCCTCTGGCTCTGAAGAAAAACCTGAATTCGTGTATGTAGAACTTCAGGAAATACGGAAAGATGTCCAATGTCCCATTTGCCTTGGCATTATCAAGAAGACAAGAACTGTCATGGAATGCTTGCACCGTTTCTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAATAATGAATGCCCTGCCTGCCGCACACATTGTGCCAGCCGTCGTTCCTTGAGAGATGATCCAAATTATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCAGAAGCACTTGTTAAGAGACGTAAAGATACACCAGGAGCATTTGTTACAAGATCACAGCGTAATCAACGAAACATTCATTCTAGGAGGCAAACCCTAGCAAATGAAGGATCCGAAGATAATGAGGAGGAAAATGAAAATAATGAAAAGGATTCATCTTCGGCTGATGAACGAAGTACAGAACACAGGCAGAAAAGGCGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCAATGGCAAGTCCAGATGGAGGCAATGATAGTGATATGGATGTAAGTAGAGAAAATCGTGGAATTTCAAGGCACGTGTCAAAACCTAGGAAGCTTACTTGGGGAAGGGGTGGTTTTCGAAGTCACACAAGACATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCTCGTGGTAGTCGATTGTCTAAGTTTGTTGACCATCTCCGAAGCTTGGATGAAAACATTAATGAGTTTGATGTCAGTCTCGTGCTTGTTTCTCTCGATCGTCAAAGTACACCAAGTTTGCCGCAACCTTACCTTTGCTGTCGACCAACTGTGTCTATTGGGCACCTTTACGAATATATTGCTCGTCAGACACCTTTTCCAGTTGAAGGAATCGAGATACTGGCAGTCAAAAGATGTCACAGTACCAATCGTGACAGGGCAGCTGATGACAATTCAATCCTGATATATGATGAGCTATCAACGCTGGTTATAGATCCACACAAAGATGAACTGGAAGTATTGCAAGAACATGAGACTCTGTCAGGGATTAGGTCCAAATGCATATCCAAGATGGGGCATTTGATTCTTGCATACAGGCGGAAGGAAGTTTCATAG 1509 0.4513 MPAQKRSLPDSLDEGDTSHHNLFHSRHAKHQQQQQQDQSHEHDEDHHHEEEEQEEEEEEEEEEEGEGEEEEDDEEEEDEEVEEAAHDNDDKEKPQDSDETPSSGSEEKPEFVYVELQEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGAFVTRSQRNQRNIHSRRQTLANEGSEDNEEENENNEKDSSSADERSTEHRQKRRKRWARVRPSQPSSSMASPDGGNDSDMDVSRENRGISRHVSKPRKLTWGRGGFRSHTRHGSGGGSNSKSSRGSRLSKFVDHLRSLDENINEFDVSLVLVSLDRQSTPSLPQPYLCCRPTVSIGHLYEYIARQTPFPVEGIEILAVKRCHSTNRDRAADDNSILIYDELSTLVIDPHKDELEVLQEHETLSGIRSKCISKMGHLILAYRRKEVS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00887 502 CDD RING-HC_RING1-like 122 187 - -
Spst5g00887 502 MobiDBLite consensus disorder prediction 30 47 - -
Spst5g00887 502 ProSiteProfiles Zinc finger RING-type profile. 125 165 IPR001841 -
Spst5g00887 502 ProSitePatterns Zinc finger RING-type signature. 141 150 IPR017907 -
Spst5g00887 502 MobiDBLite consensus disorder prediction 48 85 - -
Spst5g00887 502 MobiDBLite consensus disorder prediction 348 362 - -
Spst5g00887 502 PANTHER OS11G0578200 PROTEIN 34 500 IPR044592 -
Spst5g00887 502 MobiDBLite consensus disorder prediction 238 255 - -
Spst5g00887 502 Coils Coil 43 78 - -
Spst5g00887 502 MobiDBLite consensus disorder prediction 86 109 - -
Spst5g00887 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 188 IPR013083 -
Spst5g00887 502 MobiDBLite consensus disorder prediction 1 109 - -
Spst5g00887 502 SUPERFAMILY RING/U-box 112 179 - -
Spst5g00887 502 MobiDBLite consensus disorder prediction 225 363 - -
Spst5g00887 502 MobiDBLite consensus disorder prediction 314 328 - -
Spst5g00887 502 Pfam Zinc finger, C3HC4 type (RING finger) 124 164 - -
Spst5g00887 502 Coils Coil 191 222 - -
Spst5g00887 502 SMART ring_2 125 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00887 Spst-Chr5 8197952 8207916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00887 117 188 C3H Transcription Factor Family AT3G23060 34.667 2.01e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00887 K10695 - gmx:100776547 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00887 5 8197952 8207916 Spst5g00887 5 8197952 8207916 ECH