Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00886 ATGGAGGGGTTGGAGCCAAAGGTGGTGGTGAGGAGCGAGAGGTGGAAGAGGGATGTGGCAGATTGTGGTGACAAAGGGTACGTTGAGCTGATGCAGGAGAAGAATAAGAAGAATAAGAAAGGGGCGGTAGGGAAGAAAGGGTGTGCTGCAACTGGTGGTGGACATAGCATGTTGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTGCATGAGGCCAAGCAATACCACAGGAGGCACAAGGTGTGTGAGTATCATGCCAAGGCTCAGGTTGTTCTTGTTCATGGCATCAGACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAGTTGTCTGAATTTGATGACACAAAAAGAAGTTGTCGCATGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACAAAGAGACAGAGGCCCCTCAATTGAAGAACATTGCTTGTGGTCAGGCTAATGAAAGGGAGAGAACTCATGCAGCAATACAAGAAAATTCTGCATACAAAAATTTCCAAATAAGATAA 552 0.471 MEGLEPKVVVRSERWKRDVADCGDKGYVELMQEKNKKNKKGAVGKKGCAATGGGHSMLCCQAEKCNADLHEAKQYHRRHKVCEYHAKAQVVLVHGIRQRFCQQCSRFHELSEFDDTKRSCRMRLAVHNERRRKNSDQSQAEGSSHKETEAPQLKNIACGQANERERTHAAIQENSAYKNFQIR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00886 183 MobiDBLite consensus disorder prediction 126 183 - -
Spst5g00886 183 Pfam SBP domain 60 133 IPR004333 GO:0003677
Spst5g00886 183 SUPERFAMILY SBT domain 58 137 IPR036893 GO:0003677|GO:0005634
Spst5g00886 183 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Spst5g00886 183 MobiDBLite consensus disorder prediction 126 143 - -
Spst5g00886 183 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 144 IPR044817 GO:0003677
Spst5g00886 183 Gene3D - 50 121 IPR036893 GO:0003677|GO:0005634
Spst5g00886 183 FunFam Squamosa promoter-binding-like protein 14 51 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00886 Spst-Chr5 8188975 8190781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00886 60 183 SBP-box Gene Family AT3G15270 54.400 3.28e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst5g00886 SBP 5.6e-31 No_clan