Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00884 ATGCAAAATAACAAACCCACCCCAACGCTAACAACACCCAAAGCGATACCAACGGAACCAGGAAAAATCGTAGAAGCGGAATGTTATTGCGGAGACGACACCAAAGAAGTTGGGCCTGACCTCTCATCCGAGCAAGGAGATGACCCATTTTCTGATGGTGTTGTACAGGTGGAGAAAGGTAGTGACAGAAATGGTAAAACGGCTATTTGCCATGGTGGGTCTTGGGCTGTTCCCCTGGGTTCCCTCTGGTCAGCTTCGACTGAGAAGTGGCTCGTAGAATTGGAGTTGAATCTTGGGGATTTGATATGGTTGCCGTTCAAAGATTGGAGCTTTGTTCTTAATTCTGCGGCGGCTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGGATATCTCACTTCATTTGTATGTTATTGATATGTCACTTTCTCAGCAGCTGTTTACAACAAAGGACAAGAGCAATTTAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGGAATTCTGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTTGGTGGTGCCCAAATCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTCGCCAACAGTGGAAAAGAAGGGGAGTTGAATCATAATGAAGATTATATTTTATCTAATCCATATCATCTGCTAGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCGCGAGATAAGATGTGGAGAAGAAAACATTCACTGATTCATGACACGGAGAAACATTGTAACATCGAAATTGCTGCTCAGATTTCACACTTGCCATCATCAAATAGTGAAGGTGAACATGATCATTTTCATCTAGAAGGGTTAATGGAGAGCCCCTCTGCAGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACATCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTACAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATACCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGATTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGGTAACTGTCACTCGGCTAGCAATCCCATTGTACATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGACTGTATTTATTGGCCTTCAAGCTGCAATTCTCTTACTTCAGCATTATCTTGGGTCACGTTGGTTCATTCCTCGACAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCATGAAACAAGACATGCTACAGACTGTGTGATTTGCATGACAGCCATTGATCTTTCCCAGCGATCCAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGCCCATTACCCCCTGCCTAA 1938 0.4164 MQNNKPTPTLTTPKAIPTEPGKIVEAECYCGDDTKEVGPDLSSEQGDDPFSDGVVQVEKGSDRNGKTAICHGGSWAVPLGSLWSASTEKWLVELELNLGDLIWLPFKDWSFVLNSAAALRPLRERTRSWDDEDISLHLYVIDMSLSQQLFTTKDKSNLGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTNGNSGVVIFHDVFDNEYDVGGAQIRIEGVYIWPFRQLRMVANSGKEGELNHNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDTEKHCNIEIAAQISHLPSSNSEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGVTVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLTVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDHETRHATDCVICMTAIDLSQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00884 645 CDD RING-H2_TUL1-like 589 644 - -
Spst5g00884 645 SMART ring_2 595 638 IPR001841 -
Spst5g00884 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 645 IPR013083 -
Spst5g00884 645 ProSiteProfiles Zinc finger RING-type profile. 595 639 IPR001841 -
Spst5g00884 645 Pfam Ring finger domain 594 639 IPR001841 -
Spst5g00884 645 PANTHER RING ZINC FINGER PROTEIN 201 644 - -
Spst5g00884 645 SMART ringv_2 594 639 IPR011016 GO:0008270
Spst5g00884 645 FunFam E3 ubiquitin-protein ligase, putative 581 645 - -
Spst5g00884 645 SUPERFAMILY RING/U-box 577 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00884 Spst-Chr5 8146494 8160204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00884 588 644 C3H Transcription Factor Family AT2G17450 35.088 6.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00884 K23788 - gmx:100780140 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00884 5 8146494 8160204 Spst5g00884 5 8146494 8160204 ECH