Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00879 ATGTCTCCACTGAAGCTCCTTCTCATTCTTCTTCTCACAGCAACTTTTAGTTCAGTTTCTAGTACCGAATTTGTCTATAACACAAACTTCAACTCCACAAACATCATTCTATATGGAAATGCCTCTATACAGACCTCCATTCTGACTCTCACAAATTCAAGTTTCTTTTCCATGGGCCGCGCTTTCTACCCTCACAAAATACCTACCAAAAAAGCCAACTCTTCCACTTTACTCCCCTTTGCAACCTCCTTCATTTTCTCTATTGCCCCCATTGAAAACTTTATCACTGGTAATGGCTTTCTCTTCCTATTCACACCATCAAGCGGTGTAAATGGTACGACTTCAGCCGAGTTTATCGGTCTTTTCAATCTTACCAATGATGGCAATCCTCAGAACCATGTTTTTGGAGTTGAATTTGATATAGTTAGAAATGAAGAAGAGTTCAATGATGTTAGCAATAATCATCTTGGTGTTGACATAAACTCGCTTCGCTTCTCAACTTCGCATGAGGCTGGCGAATGGGAAGGGAAAGGTGACAAAAAGTTTAAGGAATTGGAGCTAAAAAATGGAGAAAATTATCAGGTATGGATTGAATATATGCACACCCAACTTAGCGTTACTATGGCTCGGGCAGGACGAAAGAAGCCTAGCGTGCCTCTAATCAGTAGTAACGTTAACCTTTCAGGGGTTCTTATGGATGAAACATACGATGGATTCACTGCAGCAACAGGGAGGTTACTAGACAGCACTAGGATTCTTGCTTGGAGTTTCAGTAATTCAATTTTTTCAATAGGTGATGCTTTGGTGACAAAAAAGTTGCCTTCATTTGTCCATCAAAAAAGGTGGTTTTCTGAAGGACGAGCTTTGGCTGTAGAAGAAGCTGAAGACTGGGAACTGGAGTATTGGCCTCATAGGATTGATTTCCATGATATTGATGCAGCAACAAGAGGGTTCTCTGAAGAGAATGTGGTTGCTGTTGGAGGGAACGGGAAGGTGTATAAAGGGGTTTTGCATGGAGCAGAAGTTGAGGTGAAGAGAACCCCTCAAGAACGGGCAGAAGGGATGAGAGAGTTTTTGGCTGAGGTCTCAATCCTAGGCAGAATGAAACACAGAAATTTAGTAGGATTGAGAGGTTGGTGCAAAAAAGAGAGGGGAAATTTGATAATAGTTTATGACTTCATGAGCAAGGGAAGTTTAGACAAAAGGATATTTGAGTGTGAAGAGAGATTGGTGCTAACATGGGAAGAGAGGGTTCAAGTCTTGAAAAATGTAGCCACAGGGATTCTATACCTGCATGAAGGTTGGGAAGTTAAGGTCTTGCATAGGGACATTAAAGCAAGCAATGTTCTTCTTGACAAGGACATGAATGCAAGACTGGGAGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTTGCCAGCACAACAAGAGTAATAGGGACCATCGGATACATTGCTCCTGAAGTGATTAGAACAGGAACAACATCAACTATGTCTGATGTGTTTGGTTTTGGAATATTGGTGTTGGAAGTAATTTGTGGGAGAAGATCAATTGAAGAGCATAAACCAGGTCTCATTGATTGGTTGAGGTCCCTAATGGTGCAAGGCCCATTGCACAGTGCTGTTGATGAAAGGTTGAAGACTAAAGGCGTATACACCGTAGAGGAAGCTGAAAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCGTAGTATTAGACCAACGATGAGGCAGGTTGTGAAAATGTTGGAGGGGGAAGTGGACGACACTGATGAAGAAAACATGGACATGAGTTTGCTTGGAAAAGTAAAATCAGCCGCAATGTGGTCTAAAACTGAAGGTGCTTTTCCATGCAGTGGTTACCCAACTTTTGATGAAATTAAGATGTTCAGTTTTAATTCTAGGACCTCTGGAAGTGGCTCAAGTACTTTTCCACAATGA 1953 0.4153 MSPLKLLLILLLTATFSSVSSTEFVYNTNFNSTNIILYGNASIQTSILTLTNSSFFSMGRAFYPHKIPTKKANSSTLLPFATSFIFSIAPIENFITGNGFLFLFTPSSGVNGTTSAEFIGLFNLTNDGNPQNHVFGVEFDIVRNEEEFNDVSNNHLGVDINSLRFSTSHEAGEWEGKGDKKFKELELKNGENYQVWIEYMHTQLSVTMARAGRKKPSVPLISSNVNLSGVLMDETYDGFTAATGRLLDSTRILAWSFSNSIFSIGDALVTKKLPSFVHQKRWFSEGRALAVEEAEDWELEYWPHRIDFHDIDAATRGFSEENVVAVGGNGKVYKGVLHGAEVEVKRTPQERAEGMREFLAEVSILGRMKHRNLVGLRGWCKKERGNLIIVYDFMSKGSLDKRIFECEERLVLTWEERVQVLKNVATGILYLHEGWEVKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHHGQVASTTRVIGTIGYIAPEVIRTGTTSTMSDVFGFGILVLEVICGRRSIEEHKPGLIDWLRSLMVQGPLHSAVDERLKTKGVYTVEEAERLLHLGLLCSNSDRSIRPTMRQVVKMLEGEVDDTDEENMDMSLLGKVKSAAMWSKTEGAFPCSGYPTFDEIKMFSFNSRTSGSGSSTFPQ 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00879 650 Gene3D Phosphorylase Kinase; domain 1 284 393 - -
Spst5g00879 650 CDD STKc_IRAK 327 589 - -
Spst5g00879 650 ProSiteProfiles Protein kinase domain profile. 318 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00879 650 SMART serkin_6 318 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00879 650 Pfam Protein kinase domain 322 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00879 650 CDD lectin_legume_LecRK_Arcelin_ConA 22 260 IPR001220 GO:0030246
Spst5g00879 650 SUPERFAMILY Protein kinase-like (PK-like) 297 588 IPR011009 -
Spst5g00879 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Spst5g00879 650 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 281 393 - -
Spst5g00879 650 PANTHER - 34 591 - -
Spst5g00879 650 FunFam L-type lectin-domain containing receptor kinase S.4 394 600 - -
Spst5g00879 650 Pfam Legume lectin domain 22 260 IPR001220 GO:0030246
Spst5g00879 650 FunFam L-type lectin-domain containing receptor kinase V.9 20 267 - -
Spst5g00879 650 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 262 IPR013320 -
Spst5g00879 650 Gene3D Transferase(Phosphotransferase) domain 1 394 609 - -
Spst5g00879 650 Gene3D - 20 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00879 Spst-Chr5 8081549 8083586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00879 19 535 Receptor kinase-like Gene Family AT4G04960 54.137 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst5g00879 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00879 - - gmx:100804553 1072.38