Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00878 ATGGGATTTGAAAACTTTGCTGGACCTCATAAGCATCAGGCAGTGGCATTGAGAGTCCAAGCAGACAAGTCTCTATTCTACAATTGTTCAATGGATGGATATCAAGATACACTTTATGTACACACCATGCGTCAATTCTATAGGGATTGTACCATTTCAGGTACCATCGACTTTGTGTTTGGTAATGCACTTGCTGTTTTCCAAAATTGCACTTTTGTGGTCCGAAAGCCAATGGAGAAGCAGCAATGCATTGTGACTGCACAAGGTAGAAAAGAGAAACAACAACCATCTGGAATAGTAATCCAAGGAGGATCCATTGTGTCTGATCCTGAGTTCTACCCAGTGAGATTTGATAACAAGGCTTACCTAGCTCGTCCATGGAAGAACTACTCAAGGACCATTATCATGGATACTTACATTGATGATTTGATTGATGGTGAGGGGTATTTGCCATGGCAAGGATTAGGAGGCCCTTCTGGCACGAATACTTGCTTTTATGCTGAGTATCACAACATTGGCCCTGGTTCAAACAAATCGAAGCGTGTTGATTGGGGTGGGATTTGGAACCTTAATTCAAAAGCTGCACATTGGTTCTCACCATCCAAGTTCTTTCATGGAACTGATTGGATTGAGGTTACTGGAATTCCTTGCTTCCCTGGCATACCCAAACACCATAAACACAAGAACACAATACTAACCTGGTGA 705 0.4227 MGFENFAGPHKHQAVALRVQADKSLFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMEKQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNYSRTIIMDTYIDDLIDGEGYLPWQGLGGPSGTNTCFYAEYHNIGPGSNKSKRVDWGGIWNLNSKAAHWFSPSKFFHGTDWIEVTGIPCFPGIPKHHKHKNTILTW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00878 234 PANTHER PECTINESTERASE 1 211 - -
Spst5g00878 234 Pfam Pectinesterase 1 206 IPR000070 GO:0030599|GO:0042545
Spst5g00878 234 SUPERFAMILY Pectin lyase-like 2 218 IPR011050 -
Spst5g00878 234 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Spst5g00878 234 Gene3D - 1 222 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00878 Spst-Chr5 8080095 8080799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00878 1 216 Carbohydrate Esterase AT5G49180 56.944 9.25e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00878 K01051 - gmx:100803527 468.003