Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00877 ATGTCGAACGAAAATGGAGTGCAAGGAAAGAGAATTGCCATTATTGGTGTCTCAACTTTTTTGTTTGTGGTTGTGATAGTTGCTATGGTCATGGCTGTTATGGTTGGTGTAAATCCTAAAGAGAATGGTGCAAATGATGGTGTAGAAGACAAAAACAAAGACCATATTGCTTCTACTGTAAAAGCTGTTCAAACCCTTTGTCGTCCTACAAATTACAAACAAGAATGCGAGGAAAACCTTTTAGCAGGGGCTAGAAACACCACAGATCCAAAAGAACTTATCAAACTTGCTTTCAACATCACCATTACAAAAATTGGTGATAAACTCAAAGAAACTGATCTTTTACATGAGGTTGAGAAAGAACCTAGAGCCAAGATGGCACTAGACACATGTAAGCAACTCATGGATCTTTCAATTGGGGAGTTAACAAGGTCACTTGATGGAATAGCAGAGTTTGACCTGGTACATCTTGATAACATCCTCATGAATTTAAAAGTTTGGCTTAGTGGGGCAGTTACATACCAAGATACTTGCTTGGATGGATTTGAGAACACAACTAGTGAAGCTGGTAAAAAGATGAAGGATTTGTTAACAACAGGCATGCATATGAGTAGCAATGCCCTGGCCATTGTGACAGATTTGGCAGACTCTGTAACAAATTTGAATCTCACACAATTACTTGGGCGTAGACTCCTTCAAGATTCTGAGCTTCCCTCTTGGGTTGATCATCGTAGACTCCTTAATGCAAATGGAAGCTCATACACACGTAAGCCTAATGTCACAGTAGCTAAAGATGGTAGTGGAGATTTCAACAGCATGAATGATGCATTGAAGCAAGTGCCTAAGAAAAACAAAAAACCATTTGTGATCTACATAAAAGAAGGTATTTATCAAGAATATGTTTTAGTTACCAAGAAGATGACCCATGTGGTGTTTATTGGTGAAGGAGGAAAAAAGACACGAATAATTGGCAACAAAAATTTTGTAGATGGAATTAACACATACTTAACCGCGACTGTAGGTATGTCTCTTTTCATGTTCACAAAACTAATTTATCACTCGTACGCATTCGGGTAA 1077 0.3816 MSNENGVQGKRIAIIGVSTFLFVVVIVAMVMAVMVGVNPKENGANDGVEDKNKDHIASTVKAVQTLCRPTNYKQECEENLLAGARNTTDPKELIKLAFNITITKIGDKLKETDLLHEVEKEPRAKMALDTCKQLMDLSIGELTRSLDGIAEFDLVHLDNILMNLKVWLSGAVTYQDTCLDGFENTTSEAGKKMKDLLTTGMHMSSNALAIVTDLADSVTNLNLTQLLGRRLLQDSELPSWVDHRRLLNANGSSYTRKPNVTVAKDGSGDFNSMNDALKQVPKKNKKPFVIYIKEGIYQEYVLVTKKMTHVVFIGEGGKKTRIIGNKNFVDGINTYLTATVGMSLFMFTKLIYHSYAFG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00877 358 FunFam Pectinesterase 59 215 - -
Spst5g00877 358 CDD PMEI-like_3 65 215 - -
Spst5g00877 358 Pfam Pectinesterase 259 343 IPR000070 GO:0030599|GO:0042545
Spst5g00877 358 Gene3D - 253 349 IPR012334 -
Spst5g00877 358 PANTHER PECTINESTERASE 25 343 - -
Spst5g00877 358 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 214 IPR035513 -
Spst5g00877 358 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Spst5g00877 358 SUPERFAMILY Pectin lyase-like 254 341 IPR011050 -
Spst5g00877 358 SMART PMEI_2 58 210 IPR006501 GO:0004857
Spst5g00877 358 Pfam Plant invertase/pectin methylesterase inhibitor 62 210 IPR006501 GO:0004857
Spst5g00877 358 NCBIfam pectinesterase inhibitor domain 59 214 IPR006501 GO:0004857
Spst5g00877 358 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 215 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00877 Spst-Chr5 8078958 8080034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00877 10 342 Carbohydrate Esterase AT3G05610 43.582 8.41e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00877 K01051 - gmx:100815272 530.791