Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00876 ATGGGGTGCATATCTTCCAAGAGTGCTGCTGTTGATGACAGCAGGGAGGGTGTGGCAAGGGAATTGACTTCATCTGGCAAAAGGGCCTCGGAGATGAAGACTTCTGCATTGAATTCCAAGAAAAGGGTCGAGGGAGTTTGGAGGAAAGAGAAGGTTTTAGATGATGCTGATATGAAAGTTTCATTAATTGGCAAGGAATCCGGTGGTTCGATGCGGTTGTGTGATCATCAGAGTGGGAGGAAGACAAAGGAGAAACCTGAATCGGCTGTTCTTGATCATCCTGGTCTTGGAAGGGTTCCGAAGGGTTTAGAAGGAGAGCAAGTTGCAGCAGGTTGGCCAACTTGGCTATCTTCTGTTGCTGGTGAAGCTATCCAAGGGTGGATACCACGGAGTGCAGATACTTTTGAGAGGTTTGGTAAAATTGGACAAGGAACCTACAGTTCAGTGTATAAGGCACGTGATTTAACTCACCAAAAGATCGTTGCATTGAAGAGGGTACGCTTTGATAATTTTGATGCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGTTGGAAGGACTGATAACGTCGCAGACATCTCGCAGCTTGTACCTTGTTTTTGAATACATGGAACATGATCTTACGGGACTTGCATCAAGTCCTAACATTAGGTTTTCTGAACCACAGGTTAAGTGCTACATGCAGCAGCTTCTTAGTGGATTGAATCATTGTCATAGTCGAGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCACCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTCCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCGGAACTTTTACTTGGAGCATCTAATTATGGCGTTGCAGTAGATTTGTGGAGCACTGGTTGCATACTGGGGGAATTATATAGTGGCAGGCCTATTTTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGGTCACCATCTGAGGACTATTGGCACAAGCTGCGGTCACCACATTCAACAGTATTCAGGCCTCCCCACCATTACAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAGGCTAATAGAAACCCTACTTGCTTTGGATCCCACACTTCGAGGAACAGCAGCTACAGCCCTAAAGAGTGAGTTCTTTTCAACGGAACCCCTTCCTTGTGATCCATCAAGTTTACCAAAATATCCCCCCAGCAAAGAGATTGACACTAAATTGTGGGAAGAAGCAAAAAGGCAAGGAACTGATGGGAGAAAGGAGAAGAAAAATGGATCGAGAGTTCGACAAGAAAAAGAACCTCAGACATTTATATTATCCAAAGACAATGTGCACTCTCGCATATCAATGCAGCAAGGGCAACGCCTTCCAAACTCAAGGAGTCGGAACGAATTCTTCAATCCTCACAGAGAACCTGTGTCTGGACATTTGTTTTTTCCACACAAACAGTCAGAGGATCATAAATCAACAGTAAATTATTTCTCTGGGCCGCTTTATCAGAGGCCTATGCATTCAGGTCCATTGGTTCCAGGCAATGGCTGGGAAATGGCTGGAAAGGAAGCTGGTGAGCAGCCTCATGTTTCAAGCAAAGTCAACCTACTAAAACTATCTGGAGTGGCATCTAGGACTTCATTGTCTGGAGATAAAAAAGAAAACTCTGTTCACTCGAGGCCCCAAGCAATTCAAGCACAAAGATCTCAGGAGTCAACTAATGTTGGATCAGAGTCAGGGAGAAAGCATGATAGAAAACGTCATTCTCAGAGAATTGATCACAGGCAAATCGGAAATGGAGATGTCTCAACTCAAACTTTAATTCGGGAGGGGCATGGACCCATGGGAAACAATATCTGCCACCTCTCTGGTCCGTTACTGGTTTCATCTAACAATATGGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCGAGACGAGCACGAATGTACAAGTCTGGTGAGATATCTCGTGCAAACCAAAATTAG 2100 0.4414 MGCISSKSAAVDDSREGVARELTSSGKRASEMKTSALNSKKRVEGVWRKEKVLDDADMKVSLIGKESGGSMRLCDHQSGRKTKEKPESAVLDHPGLGRVPKGLEGEQVAAGWPTWLSSVAGEAIQGWIPRSADTFERFGKIGQGTYSSVYKARDLTHQKIVALKRVRFDNFDAESVKFMAREILVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMEHDLTGLASSPNIRFSEPQVKCYMQQLLSGLNHCHSRGVLHRDIKGSNLLIDNNGTLKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWHKLRSPHSTVFRPPHHYRRCVAETFKEYPSAATRLIETLLALDPTLRGTAATALKSEFFSTEPLPCDPSSLPKYPPSKEIDTKLWEEAKRQGTDGRKEKKNGSRVRQEKEPQTFILSKDNVHSRISMQQGQRLPNSRSRNEFFNPHREPVSGHLFFPHKQSEDHKSTVNYFSGPLYQRPMHSGPLVPGNGWEMAGKEAGEQPHVSSKVNLLKLSGVASRTSLSGDKKENSVHSRPQAIQAQRSQESTNVGSESGRKHDRKRHSQRIDHRQIGNGDVSTQTLIREGHGPMGNNICHLSGPLLVSSNNMDQMLKERDRKIQEYSRRARMYKSGEISRANQN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00876 699 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00876 699 MobiDBLite consensus disorder prediction 593 610 - -
Spst5g00876 699 MobiDBLite consensus disorder prediction 476 497 - -
Spst5g00876 699 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Spst5g00876 699 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00876 699 CDD STKc_CDK9_like 135 419 - -
Spst5g00876 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Spst5g00876 699 MobiDBLite consensus disorder prediction 1 41 - -
Spst5g00876 699 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Spst5g00876 699 MobiDBLite consensus disorder prediction 448 497 - -
Spst5g00876 699 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Spst5g00876 699 MobiDBLite consensus disorder prediction 71 97 - -
Spst5g00876 699 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Spst5g00876 699 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Spst5g00876 699 MobiDBLite consensus disorder prediction 448 475 - -
Spst5g00876 699 MobiDBLite consensus disorder prediction 76 91 - -
Spst5g00876 699 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Spst5g00876 699 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00876 699 Gene3D Transferase(Phosphotransferase) domain 1 218 458 - -
Spst5g00876 699 MobiDBLite consensus disorder prediction 579 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00876 Spst-Chr5 8071947 8076967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00876 127 460 Core Cell Cycle Gene Families AT5G10270 50.000 2.76e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst5g00876 Pkinase 6.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00876 - K08819 gmx:100781209 1184.86