Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00871 ATGATGGAGGAGTCTCTGCTGAGAGGCGAAAGCAGTGGCCTCAGCAACCGCCGGCGAGGAGTGTTCCGGCGTTCCGACGCTATCACCTACGGCTCCAACTACGAGAAAGCCGCTGCGTTCGTCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGAGCAAATTCTTGATTCATCAAACTTCCAAAGTTATGCAAGATTTTATTTTATATTCACCAAATTCAATCTCATATGGTCTCTTAATTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTAAAAAACTTGCCACGAATTCCTGCAGTGATAGAGAGTATTTCTATTTGGGTCAATTGCCATATCTAACTGATGCAGAAGCTCTAATTTATGAGGGAATAACTCTTCTTTTGCTAATAATACATACTTTCTTCCCATTGTCATACGAAGGATCCCGTATATATTGGAAGAGTGGTATTAATCAATTGAAGGTTTTCTGTCTATTAGTTCTTGTTGCTGATATGCTGCTCTATGCCTTTTACTTGTCTCCACTGGCTTTTGATTTTCTACCTTTCAGAGTTGCACCATATGTCAGAGTTGTTCTTTTTGTTCTGAACATAAGGACCCCTTCAAATTCTGCATTTGAAATTGATGTTAGGGAGCTACGAGAAACCATCATTATCTTGGCTGGGATGCTTGACACATACTTAAATGTCCTGGCTTTGGGATTGCTGTTTCTTCTTTTCGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTCTTCACTTCCTACGGTACTACGTTGTATCAGATGTTCCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCTCGTTGGTATTGCTTGTTTTTTGTACTGTTTGTGCTGGTTGGAGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTTTATGACAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTTGAAAAGGATCTTCTGAGAAGAACAATGTTGGAGAAAGCTTTTCATCTCTTAGATACACATAATGTTGGATGGCTCAACAAAAATCAATGCATTAGGCTCTTTGAGGAGTTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGGGAGGAATTTGAGTTGATATTTGATGAGCTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCTGATATATGCAATGCAATTGCATTAAAATTTCAGAAGGAAGATGTTACATCTTACTTTGAGTATTTAGCATTCTACGACTGGCCCAGCTCAATGAGATTAAAAGAATTTGTGAAGAGTCCTATGTTTGGATACCTAGTGTCCTTCATTCTCATAGTAAATCTGGTTGCGGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGCACAAAAGGTGTGGCAGGTGGTTGAGTTCATTTTTGGGTGGATATATGTAATAGAAATGGTTTTAAAGGTTTATGCATATGGATTCGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATTATCACAGTGATAATTGCCATTGGAGAAACTGTAAGTTTTGCTGTACCTGATGATGATCTTCCTTTTATCTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGACTCCTAATGCATGTCAAGCGATACCGAGCCTTTGTGGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGTATTTATTGTTCGCTTGGTGTACAGATTTTTGGTGGAATTGTTAATGCTGGAAACCCCGAATTGGAATCAACCGCTCTTGCCGAAAATGACTATTTGGTTTTCAACTTCAATGATTACCCTAATGGAATAGTGACACTGTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGCTACAAGGAATTAACTGGGACTTCTTGGACCTATTTTTACTTCATTAGCTTCTACTTAATTACTGTTTTGCTGCTTTTGAACTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCATCAGAAACTAGTGAAGGAAATGACAAGGAAGTTGGAGGAGATAAATATCGAAAGCGGTCTATTGGCACTAAAACACGAAGCCAAAGGGTTGACGTTCTTCTTCATCATATGTTGAGTGCCGAGTTGTGTCAAAATCAGCCTTCCAATACAGAAACTTGA 2253 0.387 MMEESLLRGESSGLSNRRRGVFRRSDAITYGSNYEKAAAFVDLAEDGVGLPEQILDSSNFQSYARFYFIFTKFNLIWSLNYFALIVLNFLEKPLWCKKLATNSCSDREYFYLGQLPYLTDAEALIYEGITLLLLIIHTFFPLSYEGSRIYWKSGINQLKVFCLLVLVADMLLYAFYLSPLAFDFLPFRVAPYVRVVLFVLNIRTPSNSAFEIDVRELRETIIILAGMLDTYLNVLALGLLFLLFASWVAYVFFEDTIQGKTVFTSYGTTLYQMFLLFTTSNNPDVWVPAYKSSRWYCLFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLLRRTMLEKAFHLLDTHNVGWLNKNQCIRLFEELNKYRTLPKISREEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVTSYFEYLAFYDWPSSMRLKEFVKSPMFGYLVSFILIVNLVAVIIETTLDIENNSAQKVWQVVEFIFGWIYVIEMVLKVYAYGFENYWRDGQNRFDFIITVIIAIGETVSFAVPDDDLPFISNGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYKELTGTSWTYFYFISFYLITVLLLLNLIIAFVLEAFFAEMDLESSETSEGNDKEVGGDKYRKRSIGTKTRSQRVDVLLHHMLSAELCQNQPSNTET 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00871 750 Gene3D - 216 323 - -
Spst5g00871 750 Gene3D - 570 726 - -
Spst5g00871 750 FunFam Two pore calcium channel protein 1 216 327 - -
Spst5g00871 750 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Spst5g00871 750 Pfam Ion transport protein 133 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst5g00871 750 Pfam Ion transport protein 444 690 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst5g00871 750 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 745 IPR044581 GO:0005245
Spst5g00871 750 FunFam Two pore calcium channel protein 1 436 569 - -
Spst5g00871 750 FunFam Two pore calcium channel protein 1 570 727 - -
Spst5g00871 750 Pfam EF-hand domain pair 342 406 IPR002048 GO:0005509
Spst5g00871 750 SUPERFAMILY Voltage-gated potassium channels 443 690 - -
Spst5g00871 750 Gene3D - 324 407 - -
Spst5g00871 750 Gene3D - 435 569 IPR027359 -
Spst5g00871 750 SUPERFAMILY EF-hand 331 410 IPR011992 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00871 2 750 Ion Channels AT4G03560 65.600 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00871 K16900 - gmx:100806160 1298.49