Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00866 ATGGCCTCAGACCAGTATTTTGAGGAGGTTGTACCCCAGTTGGGTTCCTTTGAAGATAAATCATCTCTCGAAACATGGAAATGTGGTGGTGACGACATTGCGGATTCAGATAAAAATGCCTCCAGTGGCTTTGATTGCAACATCTGTCTGGATTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACATCCATAGTGCCTCTTCTGAAAGTGAAGAGAAGCAACGATGTCCAGTATGCAAATCAGAAATCTCACAGTCATCACTGGTTCCACTGTATGGGCGTGGCCAAACCACGCTACCTTCCAAAGGCAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGATTACCAGTTCACCAAGATCACATGATTCTGAAACTGTTCAACATACTTCTCATGTTTATCACCGCCATTATCCGAACCATCCTCAACAATTCAACTCAATTCCTGGCAGTTACCCTTCAACAATGTTCAACACTGGTGGTTCACTAGCTAATGCATTTGATACAACATATGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACTAACGTGTACACATACGCGAATTCATATGATCTTTCAGGGAGCAGTAATCCAAGGGTCAGAAGGCACTTAATGCAAGTTGATAGGTCACTGAATAGGATAACTTTTTTCCTCCTTTGTTGCATAGTTTTGTGTCTTCTCTTATTCTGA 771 0.4306 MASDQYFEEVVPQLGSFEDKSSLETWKCGGDDIADSDKNASSGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNIHSASSESEEKQRCPVCKSEISQSSLVPLYGRGQTTLPSKGKGHQVGIVIPRRPLGPSWITSSPRSHDSETVQHTSHVYHRHYPNHPQQFNSIPGSYPSTMFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNVYTYANSYDLSGSSNPRVRRHLMQVDRSLNRITFFLLCCIVLCLLLF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00866 256 Pfam Zinc finger, C3HC4 type (RING finger) 46 92 IPR018957 GO:0046872
Spst5g00866 256 CDD RING-HC_AtRMA-like 44 94 - -
Spst5g00866 256 SMART ring_2 46 92 IPR001841 -
Spst5g00866 256 ProSiteProfiles Zinc finger RING-type profile. 46 93 IPR001841 -
Spst5g00866 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 253 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst5g00866 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Spst5g00866 256 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Spst5g00866 256 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 106 - -
Spst5g00866 256 SUPERFAMILY RING/U-box 41 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00866 Spst-Chr5 7968609 7969379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00866 39 256 C3H Transcription Factor Family AT4G28270 36.889 4.08e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00866 K10666 - gmx:100785491 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00866 5 7968609 7969379 Spst5g00866 5 7968609 7969379 ECH