Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00857 ATGGCTGCAGCGAACAGTGGAAAATTTGATGGGGGAGATGAAACTCACAATTGTTTCCAGGAAGGAAGTGAAAGCAAAGATTGGGGAATTGAAAAGGGAAAGGGCGTGGATTCAAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGATACTTCCATTTCATACAATAGACCTCTGAAGAAAATCCGCAGCCCCGATCGCCATAACACAAGCCAATCTTCTTCCTCTTCTTCTTCTGTTCCTTTTCAACCTTCTCCTCTCTCTACCCCTCCTTCATCCTCTTCAAGAATTGTGTTCCCTTTCGCCTTCAACGGTTCCCAACACCCAATGCAATTCCCTCACCAATTCGGAGCCACAAATTCGCCTTTTCCTCTCCCCTCTTTCCAAAACCAACAACAGATGATATCATTCGGGTCCCAACAACAAAATCTTCCCTTTCCACCAATCATGGCCCGAGATTCTTCTTTTCTACACCACCACCATCAGCAGCAGCATCCACAGCAACTTCTTCAGCATTGGAGAGACGCGCTGAATCTAAGTCCCAGAGGAATGTTAACCCATTTGGGGCCAGATGGAAGGCCATTGTTTAGGCCTCCATCGCAGCCCATAAACACGACCAAGCTCTACAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTCGCTGAAATTCGTCTTCCTCGAAACAGAACGCGTCTCTGGCTAGGCACATTCGACACGGCGGAGGACGCCGCCATGGCCTACGACCGTGAAGCTTTCAAACTCCGAGGAGAAAATGCCAGACTAAATTTCCCCGAAATGTTCAAAAACAAACAAGTTCAAGAAGAACCTTCTTCACCCGTTCAAAACCAGCATGCAGATGAACCCGTTCCTGAAGGCCGTGACATGCCAAGAGAAGAGTCTAACGAGAATGACTCGGGAATTGGATCGAGTGACGCCACTGTGAGTGATGAGGTTCATGCTGCTGCTGCAGAAGGAGGTGAAGGGGTTTCTCAGGAACTTGTTTGGGGAGAAATGTCTGCTTGGTTCAATGCTATTCCTGCAGCTTGGGGACCCGGTAGTCCTGTGTGGGATGATTTGGATCCCACCAATAATCTTCTTTACCAATCACACGTTCCTTTTTCAAATTCCAATCAGCAAGAGTTCAATTATGCTACTAATGATGCTCAGAGACATGAACACAACACAGGACCAGGTTACTTATGGAAGGATCAGGATTGA 1224 0.4763 MAAANSGKFDGGDETHNCFQEGSESKDWGIEKGKGVDSSSQRRQWKPVFDDTSISYNRPLKKIRSPDRHNTSQSSSSSSSVPFQPSPLSTPPSSSSRIVFPFAFNGSQHPMQFPHQFGATNSPFPLPSFQNQQQMISFGSQQQNLPFPPIMARDSSFLHHHHQQQHPQQLLQHWRDALNLSPRGMLTHLGPDGRPLFRPPSQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPEMFKNKQVQEEPSSPVQNQHADEPVPEGRDMPREESNENDSGIGSSDATVSDEVHAAAAEGGEGVSQELVWGEMSAWFNAIPAAWGPGSPVWDDLDPTNNLLYQSHVPFSNSNQQEFNYATNDAQRHEHNTGPGYLWKDQD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00857 407 ProSiteProfiles AP2/ERF domain profile. 209 266 IPR001471 GO:0003700|GO:0006355
Spst5g00857 407 SUPERFAMILY DNA-binding domain 209 267 IPR016177 GO:0003677
Spst5g00857 407 SMART rav1_2 209 272 IPR001471 GO:0003700|GO:0006355
Spst5g00857 407 MobiDBLite consensus disorder prediction 289 303 - -
Spst5g00857 407 Pfam AP2 domain 210 258 IPR001471 GO:0003700|GO:0006355
Spst5g00857 407 MobiDBLite consensus disorder prediction 273 329 - -
Spst5g00857 407 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 27 361 - -
Spst5g00857 407 MobiDBLite consensus disorder prediction 69 94 - -
Spst5g00857 407 Gene3D AP2/ERF domain 209 268 IPR036955 GO:0003700|GO:0006355
Spst5g00857 407 PRINTS Ethylene responsive element binding protein signature 232 248 IPR001471 GO:0003700|GO:0006355
Spst5g00857 407 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Spst5g00857 407 MobiDBLite consensus disorder prediction 14 39 - -
Spst5g00857 407 MobiDBLite consensus disorder prediction 1 94 - -
Spst5g00857 407 FunFam Ethylene-responsive transcription factor 2 208 267 - -
Spst5g00857 407 CDD AP2 208 267 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00857 Spst-Chr5 7902487 7903710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00857 33 377 AP2-EREBP Transcription Factor Family AT2G20880 44.986 5.39e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst5g00857 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00857 - - gmx:100809887 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00857 5 7902487 7903710 Spst5g00857 5 7902487 7903710 ECH