Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00839 ATGTACCAATTACAAAAACTTTTTTTAGTGGGTACTTTCTCTTTGCGGTATTCCACCTTTGCCAGTTTTTGGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTTAAAGTAATGGGTCGTACTGGGTCTAGAGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACAGGCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTGCTTGAGTCCGAAAGAGAAGCAAGAAGGGATATAACCACGCTTGACGTCACACTGATTTCCGATGTTGAAGACCTCGCGAATGTTGAATTCCCTGACACCGTGCATCAAGTTAGTACTGATTCATGGTTTCAGATGAGAGCGGGGTTAGAGGTGGAACCTGGTCAAGTTCGGATTTGGATCCGAACTCGGGAGATTGAGCTAGCGCAAAGGAGAAAGGTGTGGTTGCAGTAG 465 0.4602 MYQLQKLFLVGTFSLRYSTFASFWMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRDITTLDVTLISDVEDLANVEFPDTVHQVSTDSWFQMRAGLEVEPGQVRIWIRTREIELAQRRKVWLQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00839 154 PANTHER 40S RIBOSOMAL PROTEIN S28 25 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst5g00839 154 SUPERFAMILY Nucleic acid-binding proteins 25 87 IPR012340 -
Spst5g00839 154 CDD S1_S28E 30 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst5g00839 154 Hamap 30S ribosomal protein S28e [rps28e]. 25 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst5g00839 154 FunFam 40S ribosomal protein S28 25 88 - -
Spst5g00839 154 Gene3D - 24 87 IPR012340 -
Spst5g00839 154 Pfam Ribosomal protein S28e 28 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00839 Spst-Chr5 7707361 7712741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00839 25 87 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.302 3.43e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00839 K02979 - gmx:100818200 125.176