Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00838 ATGTTGAATCGTTTTGCAGCCATGACTGACGTCGTCCACGAAGCTGGGGTTGTTGCAGATCCCACCCAGATCGATGTTAAGCTCTTTAACCGCTGGAGCTTCGATGATGTTCAGGTCAACGACATTTCTCTGGCCGATTACATTGGAGTGGTGGCATCCAAGCATGCCACTTATGTGCCTCACACTGCTGGTAGGTACTCTGTGAAGCGGTTCAGGAAGGCCCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGTAGAAACAATGGCAAGAAACTCATGGCTGTTAGGATCATCAAGCATGCTATGGAAATTATTCATTTGTTGACTGATCTGAACCCCATTCAGGTTATTGTCGATGCTGTCATCAACAGTGGCCCCCGTGAAGATGCTACAAGAATTGGTTCTGCTGGAGTTGTAAGGAGACAGGCCGTGGATATCTCACCCCTCCGCAGAGTTAATCAGGCTATCTATCTTTTAACAACTGGTGCACGTGAAGCTGCGTTTAGAAATATCAAGACAATCGCTGAATGCCTGGCTGATGAACTTATTAATGCAGCCAAAGGGTCATCCAACAGTTATGCTATCAAGAAGAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTGA 645 0.4698 MLNRFAAMTDVVHEAGVVADPTQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00838 214 NCBIfam 30S ribosomal protein S7 26 214 IPR005716 GO:0003735|GO:0006412|GO:0015935
Spst5g00838 214 FunFam 40S ribosomal protein S5 9 214 - -
Spst5g00838 214 ProSitePatterns Ribosomal protein S7 signature. 80 106 IPR020606 GO:0003723|GO:0003735|GO:0006412
Spst5g00838 214 Gene3D Ribosomal protein S7 domain 8 214 IPR036823 -
Spst5g00838 214 PANTHER RIBOSOMAL PROTEIN S7 24 214 IPR000235 GO:0006412
Spst5g00838 214 CDD uS7_Eukaryote 27 214 IPR005716 GO:0003735|GO:0006412|GO:0015935
Spst5g00838 214 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 214 IPR000235 GO:0006412
Spst5g00838 214 Pfam Ribosomal protein S7p/S5e 68 214 IPR023798 -
Spst5g00838 214 SUPERFAMILY Ribosomal protein S7 27 214 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00838 Spst-Chr5 7688585 7690374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00838 25 214 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 93.158 3.91e-134 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00838 K02989 - gmx:100803239 375.555