Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00813 ATGTCCTTGGAAAAAGAACTAACGGTAGAAAGATTTGATAGTTTCTTCCAAACTGGTGAGGATTTTTGTGAGGCTTGCAGCGTTTCGTTTCACAGAAGACCACAAAAAATGGCTCATGAACGACAGCATGATTCAGTGAAGATCATAGAGCGGTATCAAGTTGCACCGCCACCAAATTTACTTCCCTCAACCACCCTTCCTCTCACTTTCTTCGACATTCCATGGTTCTACTGCCACCCCATCCAACGCATCTTCTTCTATGAGTTTCCCCACCCCACTCACCACTTCCTCGAAACACCACTTCCCACTCTCAAACACTCTCTTTCCCTCTCTCTCCAACACTTCTTCCCCTTTGTCTCCAATCTCATCGTTCCACCGCAACCCCGTCTCTCTCACATCCGTTACCTTCCTGGTGACACTCTCTCCTTCACTGTTGCAGAGTCCACCGCAGATTTCACCCTCCTCACCTCCGATTCACCCCAAGACGTTGAAAACTGGCACCCTCTTGTTCCCACCTTACCTTCCCCACGGGTTGAGCAAGATGGCATACGTGTGTTTCCTCTCATGGCCATTAAAGTCACGGTTTTCCCAAACTCTGGCTTCAGCATATGTCTTACCTTCAACCACCTTGCTGGGGATGGCAAATCACTTCATCATTTCGTCAAGTTTTGGGCTTCTCTTTGCAAGGCAAGAGGGGACTTCGCTTCCCTTGAAACCTCTTTGCCTCTTCCTTCACACGAGAGGGACAAAGTTTTAGACCCAAAGGGGCTTAAGCTCATTTACTTTCAAGAACTTGAACATGGTGACTCGCAAAGAATGGAGTTTTCTGGGCTCGTGCGAGACCTTTCCACTAACAAGGTTCGCTTCACTGTTGTACTCACTCGTCAACAAGTTGAGAAACTAAAGAAGTGGGTCACTCTTAAATGTGCCAGCTACGATTCAGGGCTATTACACATATCAAGCTTTGTGGTGACATGCTCTTTGATTTGGATTTGTATGATTAGATCAGAGGAGAGCAAAAGCAATTGTTTATCACAAGAGTGTGATGAACTTTGCCACTTGGTGTTTCTAGCAGATTGTCGTGATCATCCTGAATTTTCATTACCTTCAACGTACTTTGGGAATTGTCTAACCTCTTATATTGTGACAATAAAGAGGAGGGAGCTAGTGGGAGAAAGTGGTATTGTTGTTGCAGCAGAGGCCATTGAAAGGCAAATTAGAGATTTGAAGAGAGATCCTTTGAGAAATGCTGAAACATTGATGTCAGATTTTAGGGAGTTAGGGAAACCAGGTAAATCTGTGTTGACCGTTGCGGGTTCACCAAAACTGGGCGTGTACCAGACTGATTTCGGTTGGGGAAAGCCTAAGAAATGTGAAGCAGTACATATTGAATCGTCAGGATCGATTTCTCTTTCTGATTGTAGGGACGAAAAAGGAGGAATTGAGGTTGGATTGGCACTGGAAAGGACTCAGATGAATAAAAAGTTCACCAACATCTTAGAAGAGGAACTTCGTGTTATTAATAAATTCTAA 1533 0.4462 MSLEKELTVERFDSFFQTGEDFCEACSVSFHRRPQKMAHERQHDSVKIIERYQVAPPPNLLPSTTLPLTFFDIPWFYCHPIQRIFFYEFPHPTHHFLETPLPTLKHSLSLSLQHFFPFVSNLIVPPQPRLSHIRYLPGDTLSFTVAESTADFTLLTSDSPQDVENWHPLVPTLPSPRVEQDGIRVFPLMAIKVTVFPNSGFSICLTFNHLAGDGKSLHHFVKFWASLCKARGDFASLETSLPLPSHERDKVLDPKGLKLIYFQELEHGDSQRMEFSGLVRDLSTNKVRFTVVLTRQQVEKLKKWVTLKCASYDSGLLHISSFVVTCSLIWICMIRSEESKSNCLSQECDELCHLVFLADCRDHPEFSLPSTYFGNCLTSYIVTIKRRELVGESGIVVAAEAIERQIRDLKRDPLRNAETLMSDFRELGKPGKSVLTVAGSPKLGVYQTDFGWGKPKKCEAVHIESSGSISLSDCRDEKGGIEVGLALERTQMNKKFTNILEEELRVINKF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00813 510 Gene3D - 45 276 IPR023213 -
Spst5g00813 510 PANTHER - 46 505 - -
Spst5g00813 510 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Spst5g00813 510 Gene3D - 283 507 IPR023213 -
Spst5g00813 510 Pfam Transferase family 45 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00813 Spst-Chr5 7443313 7444930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00813 84 502 Monolignol Biosynthesis Gene Families AT5G48930 24.887 1.75e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00813 - - gmx:100797294 749.199