Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00809 ATGTCAATGCTTGGAGGGCACAAAGTGGTTGAAAATTTTAAGATTGGTCCATCTGTGAGAACAACTTCTTCTGTTCCCCTCTCATTCCTTGATTTGCCTTTAGCAGGTCCTATTTACGTGAGACGCCAATTCTTCTACCACTTCCCTCATTCCACACTCCATTTCTATGAAACCACACTTCCTTCTCTCAAAATCTCACTCTCTCAAACCCTTCAACACTTTTTCCCTCTCGCTGGAAGCCTCCTTTGTCCTCCACCACCACACAAACCCTTCATTCGTTGCAACGACCATGACTTTGTCCCCTTAACTATCATTGAGTCCGAAGCTGATTTCAATCACCTCTCATCCAACCACCCCAAAAGTCTCAAAGACTTGGATCACTTGGTTCCGAAGTTAACATGCACAAACATACACGATGACACGTTTGTTTTCCCTTTGGTGGCACTGCAAGCCACGGTTTTCCCCACTCAAGGCCTTTGCATCGCGATCACGTATTGCCATGTCATGGATGATAGCTGCTGTGGCCATTTCATGAAGTCTTGGTCTTCCATTTGTCGAAGTGGTGGCGTTGACTCGACTCTTTTAGAGAAGTCAATACCTTGCTTTGATAGGGAAGTGTTGAAGGACCCCAAAGGACTAGAAACTATCTTCTTAAGAGACTATTTTAAAGAGAGGTCAACATGGAAGGAAAAACTGGTTGGGAAGACCTCTGATGTTTCCAATGGGTATACTGAAGATTATGTCAAAGCAACGTTTGTTTTTGGAAGGGATGATATCGAGGGGCTGAGAAAATTGGTGTTGGATCAGTGGAAGAGAAGTGAAGAATTCAACTCCTCACAATATGTATCAAAATTTGTGGTGACGTGTGCCTTTGTGTGGGCTTGTTTGGTTAAAACAAGATGCAGAAGTGATTATGAAGAACATGACAAAGAGGAGTACTTTCGTTTCGCTGCAGATTGCAGAGATCGCCTTGAGCATCCTGTGCCCGAAACATACTTTGGAAACTGCTTGACGTTATGTTTTGCAATGCTCCAGAGAAAGGACATGAAGGGAGAAGGTGGTTTTGTGAATGCGGCGAAGGTTATCAAAAGGGCAGTGACTGCTATGAAAAATGACCCGTTTAAGGATGCAGAAAACTGGAGGGAATCATTTACGAAGATGTTTTCGTTGGGAAGTACTTTGGTAGTTACTGGGTCACCCAAGTTCACTGTTTATGAGACTGATTTTGGATTTGGAAAGCCTACCAAAGTGGAAATGGTACATTCCTTGAAGGGTCTGTCTTTAGCAGAAAGTAGAGATAAGGAAGGAGGACTTGAAGTTGGTTTAGTGTGTAGAACAACAGAATTTGAATATTTAGTTTCTGTCATCAAGCAAGAACTTCGTGTTTCAGAATCCTAA 1398 0.4285 MSMLGGHKVVENFKIGPSVRTTSSVPLSFLDLPLAGPIYVRRQFFYHFPHSTLHFYETTLPSLKISLSQTLQHFFPLAGSLLCPPPPHKPFIRCNDHDFVPLTIIESEADFNHLSSNHPKSLKDLDHLVPKLTCTNIHDDTFVFPLVALQATVFPTQGLCIAITYCHVMDDSCCGHFMKSWSSICRSGGVDSTLLEKSIPCFDREVLKDPKGLETIFLRDYFKERSTWKEKLVGKTSDVSNGYTEDYVKATFVFGRDDIEGLRKLVLDQWKRSEEFNSSQYVSKFVVTCAFVWACLVKTRCRSDYEEHDKEEYFRFAADCRDRLEHPVPETYFGNCLTLCFAMLQRKDMKGEGGFVNAAKVIKRAVTAMKNDPFKDAENWRESFTKMFSLGSTLVVTGSPKFTVYETDFGFGKPTKVEMVHSLKGLSLAESRDKEGGLEVGLVCRTTEFEYLVSVIKQELRVSES 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00809 465 Gene3D - 244 463 IPR023213 -
Spst5g00809 465 Gene3D - 7 233 IPR023213 -
Spst5g00809 465 Pfam Transferase family 17 443 - -
Spst5g00809 465 PANTHER - 8 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00809 Spst-Chr5 7391834 7393231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00809 12 414 Monolignol Biosynthesis Gene Families AT5G48930 22.803 5.42e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00809 - - pvu:PHAVU_005G109000g 832.402