Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00807 ATGGGAAGAGCACCTTGTTGCAACAAAAATGGTCTCAAAAAGGGTCCATGGACTCCTGAGGAGGATCTCATACTCACCAACTACATTAACACTCATGGACCTGGGAATTGGCGAACCCTCCCCAAGAATGCTGGTTTACAAAGATGTGGCAAGAGTTGTCGTCTTCGATGGACTAATTACCTTAGACCCGACATCAAGAGAGGAAGATTCTCGTTTGAAGAAGAAGAAACCATCATTCAGCTTCACAGTGTCTTGGGAAACAAGTGGTCGGCAATAGCAGCTAGGTTGCCAGGGAGAACCGACAATGAAATAAAGAACTATTGGAACACTCACATTAGGAAGAGGTTGCTTCGAATGGGAATTGACCCTGTAACCCACGCTCCACGCCTTGATCTTTTTGACATGTCCTCGATTCTGAGGTCAGCAATAGGCAACATTAACCCATCGTTTCTGAATCTGCAAGGCTTATTGGGTGCCCAAGCGTTGATGAACCCCGAGTTTCTGAAGCTTGCTGCCACTGCCACTTTGTTATCTTTGAAGAATGATCACAACCCATCAAACTTAGTTTCACAAGTTGAACAATTCAATAACAATGCCGGGAATTGTCAAGTGCAAAGCCAAGTTGCCCCTAATCAGTTTCAGACACCAACTCAAAGCAACAACGTGAACAATGGCTTTTCAATGGCCCCAGAGAATTCAATTCCTTCCTATCTTGGCGAGCATACTTACCTGAATGCTCAACAAAACCAAGTTGATTTGCTACAGGACCCGGAATTGGTGCATTTCTTAAACAATGCAAACCAAAACATAAGTTATGAATCGGTTCTGTCTACGCCTTTGTCGACCCCAACCCCATTGAATTCATCATCCACGTATGTGAATAGCAGCACGGAGGAAGAGAGGGACACGTATTGCAGCGATGTATTCAAGTTAGAAATTCCGGAGAGTCTGGACATAAGTGATTTCTTGTAA 972 0.4424 MGRAPCCNKNGLKKGPWTPEEDLILTNYINTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLFDMSSILRSAIGNINPSFLNLQGLLGAQALMNPEFLKLAATATLLSLKNDHNPSNLVSQVEQFNNNAGNCQVQSQVAPNQFQTPTQSNNVNNGFSMAPENSIPSYLGEHTYLNAQQNQVDLLQDPELVHFLNNANQNISYESVLSTPLSTPTPLNSSSTYVNSSTEEERDTYCSDVFKLEIPESLDISDFL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00807 323 SMART sant 13 63 IPR001005 -
Spst5g00807 323 SMART sant 66 114 IPR001005 -
Spst5g00807 323 CDD SANT 69 112 IPR001005 -
Spst5g00807 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst5g00807 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst5g00807 323 CDD SANT 16 61 IPR001005 -
Spst5g00807 323 FunFam Transcription factor MYB39 69 130 - -
Spst5g00807 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst5g00807 323 FunFam MYB-related transcription factor 13 66 - -
Spst5g00807 323 Gene3D - 13 66 - -
Spst5g00807 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst5g00807 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst5g00807 323 MobiDBLite consensus disorder prediction 280 299 - -
Spst5g00807 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
Spst5g00807 323 Gene3D - 69 116 - -
Spst5g00807 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst5g00807 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00807 Spst-Chr5 7383645 7384833 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00807 1 323 MYB Transcription Factor Family AT4G21440 48.747 8.77e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00807 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00807 K09422 - gmx:100812189 528.865