Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00802 ATGACGAGACCCACTTCCTGCAACAAAAGTGGACTTAAGAAAGGCACTTGGACTCCAGAAGAAGATAGAAAGCTAATAGCTTATGTCACTCGATATGGCTCTTGGAACTGGCGTCAACTCCCAAGATTTGCAGGTCTAGCAAGGTGTGGAAAGAGCTGCAGACTTAGGTGGCTGAATTATCTCATGCCTAACATAAAAAGAGGAAACTATTCTGAAAAAGAAGAAGAAACTATAATCACACTGCACCAAAAACTGGGTAACAAATGGTCTGCTATTGCCACTCATTTACCCGGAAGAACAGACAATGAAATAAAGAACCACTGGCACAGCAATCTCAAAAAGCGTTTTGGAAATAATACAGTTCACACCAATAAAAATGTGAAAGTTGCAAAATTAAATAGGTCCAAGCAAGACAAGGACTCCAATCAGAACAATGATGATTTCTTTCACGACGGTTCTCCTTCTCCAACAATTTCTGAAACCACAGACTCTGCCTCTGACCCTTTGTCCCCCCAATTGTCCTCAGCCGAATTCTCGGATTATCCCACTAAGAAAAATTTATTTCCAAAACATGGGTTGAATTTTCTAGATACATCATGCTTAAAGGACTTCATGAACGGAAATATTATGACAGAGTCATGTCACATTTCCCATGCCTCGATGTCAAATAATGGTAACGAGAATTTGAATGTTACAAATGCTGCAAAAACCATGGAATATATATGGGCAGACTCTCCTCTTTGGTCGTATAATGAAAATTTGGCTGTGAAGAACCATGATTTTGACTTTGTAGAATCGATACAATCAATAACTGAAGATTTTTGGACAAATGCGTACTTGACTGACATGTCTGCAATTCCAAACGAGTTACTTGTGCCTTTGGTGGACGAATCCGAGGGAAACTTTTCTTCCATATACTATGAAGAAGATCTTTGGCGTTAG 942 0.3938 MTRPTSCNKSGLKKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLMPNIKRGNYSEKEEETIITLHQKLGNKWSAIATHLPGRTDNEIKNHWHSNLKKRFGNNTVHTNKNVKVAKLNRSKQDKDSNQNNDDFFHDGSPSPTISETTDSASDPLSPQLSSAEFSDYPTKKNLFPKHGLNFLDTSCLKDFMNGNIMTESCHISHASMSNNGNENLNVTNAAKTMEYIWADSPLWSYNENLAVKNHDFDFVESIQSITEDFWTNAYLTDMSAIPNELLVPLVDESEGNFSSIYYEEDLWR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00802 313 MobiDBLite consensus disorder prediction 130 176 - -
Spst5g00802 313 CDD SANT 69 112 IPR001005 -
Spst5g00802 313 Gene3D - 69 146 - -
Spst5g00802 313 CDD SANT 16 61 IPR001005 -
Spst5g00802 313 MobiDBLite consensus disorder prediction 147 176 - -
Spst5g00802 313 Gene3D - 6 67 - -
Spst5g00802 313 MobiDBLite consensus disorder prediction 131 146 - -
Spst5g00802 313 FunFam MYB-related transcription factor 13 66 - -
Spst5g00802 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst5g00802 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst5g00802 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst5g00802 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst5g00802 313 SMART sant 13 63 IPR001005 -
Spst5g00802 313 SMART sant 66 114 IPR001005 -
Spst5g00802 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst5g00802 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst5g00802 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Spst5g00802 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00802 Spst-Chr5 7283617 7284880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00802 1 119 MYB Transcription Factor Family AT2G31180 65.546 1.74e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00802 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00802 K09422 - gmx:100811124 329.717