Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00801 ATGGTGAGAACCCCTTCTTGCAACAAAAATGGGCTCAAGAAAGGAACGTGGACAAAAGAGGAAGACAACAAGTTGATCGCTTATGTCACTAAGTATGGCCACTGGAATTGGCGTTTGCTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGGCTGAGATGGCTGAACTATCTAAGGCCAGATGTTAAAAGAGGGAATTTTAGTCACGAAGAAGAAGAAACCATTGTGAAACTTCACAAAAAGCTTGGTAATAGGTGGTCAACAATTGCTGCTGAATTGCCAGGGAGGACTGATAACGAGATTAAAAATCACTGGCACACAGTCCTCAAGAAGCGTTCTGAACAAAAATCAGACGCTAAACGAGGGGTTGGACAAGAAGCTACTGTTTCCAGGTCATCGGAGAGTGTATCAGAGAACTACAGTGACCCCGATGCAACAAATGCTTTTGCTGCTGCAACCTCCGCAAACCATGAAAGTTTTGATGATTTCTCCTATTTGGATGCATACACGGAGCCTGTGTTTGCAGATTTTTGGACAGACCCTTACTTAATTGACAACTCCTATGTCCCACCTGAGTGTGAACCTGGTTACTTTAGTCCTATGTACGATGTAGAACTTTGGAACCAAAATGAGCTTTACCTGCACCAATGTGAGGGTTTATTCCAATGA 678 0.4381 MVRTPSCNKNGLKKGTWTKEEDNKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSHEEEETIVKLHKKLGNRWSTIAAELPGRTDNEIKNHWHTVLKKRSEQKSDAKRGVGQEATVSRSSESVSENYSDPDATNAFAAATSANHESFDDFSYLDAYTEPVFADFWTDPYLIDNSYVPPECEPGYFSPMYDVELWNQNELYLHQCEGLFQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00801 225 CDD SANT 69 112 IPR001005 -
Spst5g00801 225 MobiDBLite consensus disorder prediction 114 145 - -
Spst5g00801 225 Gene3D - 69 139 - -
Spst5g00801 225 CDD SANT 16 61 IPR001005 -
Spst5g00801 225 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst5g00801 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 141 - -
Spst5g00801 225 Gene3D - 13 66 - -
Spst5g00801 225 MobiDBLite consensus disorder prediction 129 145 - -
Spst5g00801 225 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst5g00801 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst5g00801 225 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst5g00801 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst5g00801 225 FunFam MYB-related transcription factor 13 66 - -
Spst5g00801 225 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst5g00801 225 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst5g00801 225 SMART sant 13 63 IPR001005 -
Spst5g00801 225 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00801 Spst-Chr5 7264459 7267550 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00801 1 190 MYB Transcription Factor Family AT2G31180 51.795 6.63e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00801 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00801 K09422 - gmx:100815765 315.464