Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00783 ATGCACATGTTAGCGAAAGCACCTAATAAAGGGGATGGAAACAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCAGCAATGATGCGGATAAGCCAGTTCGAAAAGTTCCTGCCAAGGGATCGAAAAAGGGGTGTATGAAAGGTAAAGGGGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCTAACAGAGGGAATAGGCTCTGGCTTGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCGGCCAGGGCAATGTATGGATCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCCGACGAATCCTCCAAAGATTCTCCAGTGGCAAATCATTCTGGTTCTTCAATGGCGGTGTCTGCAAATGAATCCATGGTTTCACCAAGTAACTCTGAGGAGGCAGGCGCAGGAGAGGATGTTGATTTGGAACCCATTTCCTTATCCTTAAGTGTAAAACTTGAGAACGGGGAAGGTGAATCGGGGATAAGTTCATCCCCTCCTTCTTCATAA 603 0.4793 MHMLAKAPNKGDGNKSLAKILAKWKEYNAQLDSSNDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSDESSKDSPVANHSGSSMAVSANESMVSPSNSEEAGAGEDVDLEPISLSLSVKLENGEGESGISSSPPSS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00783 200 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Spst5g00783 200 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Spst5g00783 200 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Spst5g00783 200 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Spst5g00783 200 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Spst5g00783 200 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Spst5g00783 200 MobiDBLite consensus disorder prediction 32 64 - -
Spst5g00783 200 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Spst5g00783 200 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Spst5g00783 200 MobiDBLite consensus disorder prediction 128 162 - -
Spst5g00783 200 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Spst5g00783 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 161 - -
Spst5g00783 200 MobiDBLite consensus disorder prediction 128 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00783 Spst-Chr5 7061332 7061934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00783 10 177 AP2-EREBP Transcription Factor Family AT2G40340 50.000 6.40e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst5g00783 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00783 - K09286 gmx:100527471 322.783