Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00778 ATGCACGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTGAAGGGCACGTCCATTTCCTTTCAAAACCCTACTACTCTCTTTAACACACCCCACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTCGGAAGCCTCGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGTGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGGCTCACCTCGTGGTTTCTAAGGGCATTAATCTCTAGGGCCTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTGATGAGCGTGACCGAGCTTGCCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAAATTTACAAAGCCATAACGGGTTACCAAAAGGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTAGCAAAAAGGCCTGAAGGACCTCCTTCACTTAGAATCACTGTTCCATCTTGTAGACCACATGTACCCCCCTTGGTCAATATATCAATACAAGAGGTTGGTTTACGTTTAGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTCGAATTCAATGTTATAGGAAACGCAGGACCATTAACACCTCCAGAATTGAGCGATGAATTGACTAGCTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTGTGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTACGCTATTTGTCTGATGACAGAAAGGGAGGCCGCCAAAGTCTTTCTCTTAGGGATGCTTTTTTGAATCTAATAAAAGGTCTTAACCCCCGGATTGTGCTCTTGGTTGATGAGGATTGTGATATTAGTGCATCTAGTCTCACATCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTTGTCAGAGGACTGAGTTTGAATCCGACATAGGCCAAAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATAGAGAGGTTGGAGAGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGTTACCTCAGTGTTCCATTTTGTGATGAAACTGTTAAGGAAGTTAGAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTGTTCGCGACAGCTTGGGTCCCCTGTGAAATGAGGGATCATGTCGGTATGGATGCAAGTATGTCTTAA 1383 0.4425 MHVTSSHSHMKAELKGTSISFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGYQKVHILDFSITHCMQWPTFIDALAKRPEGPPSLRITVPSCRPHVPPLVNISIQEVGLRLGNFAKFRDVPFEFNVIGNAGPLTPPELSDELTSFHFEAMLSLLNPTVLNLREDEALVINCQNWLRYLSDDRKGGRQSLSLRDAFLNLIKGLNPRIVLLVDEDCDISASSLTSRITTCFNHLWIPFDALETFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGVQMSQRMKNVGYLSVPFCDETVKEVRGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEMRDHVGMDASMS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00778 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Spst5g00778 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 434 IPR005202 -
Spst5g00778 460 Pfam GRAS domain family 52 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00778 Spst-Chr5 6936952 6938334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00778 25 447 GRAS Transcription Factor Family AT3G49950 44.676 1.27e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g00778 GRAS 4e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00778 - - gmx:100805056 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00778 5 6936952 6938334 Spst5g00778 5 6936952 6938334 ECH