Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00775 ATGTATTCCGGTGACGCCTCCTCCTTCGACCCCATGTTTTCCGCCACCAGTTTACAGTCACTCCTCTCTCTCAACCCTTCCCTCTTCGCCGATGGCTTCCCCACCTTGGCTTCCCTAACCGACGATCCTACTCTAATTCCCCAACCCTCACAGCCCCCTAAACTTCTCGTCCCCAAAACCGAACCACCCCCTCAACCCTTCAAATTCTTCCCCCAATACCACCCCACCGCCTTCCACCGCCTCCCTCACCTCCGCTCCCCGGACCAGCCCCACCCCAAACGCCACCGCCTTGACTCTCCGGTGATCCCGCAGAGCAACCTCGCTCGCCAACGCAGACAGAAGCTCAGCGAGAAAACGCGGTGCCTGCAGAAGCTGATGCCCTGGGACAAGAAAATGGACCAAGGCACGCTTCTGGAAGAGGCCTACAAATACGTGAGGTTCCTCCAGGCTCAGTTCCGCGTGCTCCAGTCCATGCCCTCCCACGCCTCCTCTTCCTCCCCTTCCTTCCGCCAAAACGGCACCGTATTCGTGGATCTCGAGAAGCTGAATCGGTCCCAGCTCCTCCAGGTGCTCGTTAACTCCCCCGTCGCCCAAACCATGCTTTATTCCCAAGGTTTCTGCGTTTTCTCCCTCGAACAGCTGTCTCTTCTCAGAAAATTATCCGAGAGGAGGCAGCACCAGCACCCACACGTGACCGATCCTGCTTCCTCCAAATCTTTTTTCAACTAA 729 0.5734 MYSGDASSFDPMFSATSLQSLLSLNPSLFADGFPTLASLTDDPTLIPQPSQPPKLLVPKTEPPPQPFKFFPQYHPTAFHRLPHLRSPDQPHPKRHRLDSPVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHASSSSPSFRQNGTVFVDLEKLNRSQLLQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRKLSERRQHQHPHVTDPASSKSFFN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00775 242 Gene3D - 103 166 IPR036638 GO:0046983
Spst5g00775 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 148 IPR011598 GO:0046983
Spst5g00775 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 159 IPR036638 GO:0046983
Spst5g00775 242 MobiDBLite consensus disorder prediction 46 61 - -
Spst5g00775 242 MobiDBLite consensus disorder prediction 40 61 - -
Spst5g00775 242 MobiDBLite consensus disorder prediction 223 242 - -
Spst5g00775 242 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 91 220 IPR045843 GO:0003700|GO:0006355
Spst5g00775 242 SMART finulus 105 154 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00775 Spst-Chr5 6799890 6800618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00775 111 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 44.144 2.51e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00775 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00775 - - aprc:113855910 302.367