Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00770 ATGGACATGAATTCCTCAGGTGGTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTGCGGACTTCATGGCTGCAGCAGACTCTGGAGGTTTCAGTTGGGGGCCTCAAAGTCACACCTTAAAGGGTCCTCCTTCAAATATTAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCCTGGAGAATGGTCCTTCAAAGCGGTTAAGGACCGAATCATGTGGATCTGGCTCCAAGGCATGTCGCGAAAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCTATCTTAGAGCCTGGTAGGCCGCCCAAAGCAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAGTGCAATTGAGAAATGAAGCCGAGAAGCTGAAGGAAATGAATGATGAATTACAGGCAAAAGTTAAAGAGTTGAAGTCTGAGAAGAATGAGCTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAATTGGAGCAGCAAGTAAAACTGAAAAATATACAGCATAGCTTCCTCCCTCAAGCCCCAGCTGCTAAAGGACAAGTTGGTAGCCATAAGCTGATACCTTTAATTGGCTACCCTGGAATTGCTATGTGGCAGTTTATGTCCCCTGCTGTAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATGA 702 0.4473 MDMNSSGGASGWLYDYGFDIPVAGADFMAAADSGGFSWGPQSHTLKGPPSNISLEMEYSLDSTVLENGPSKRLRTESCGSGSKACREKLRRDKLNERFLELSSILEPGRPPKADKVAILSDAARVVVQLRNEAEKLKEMNDELQAKVKELKSEKNELRDEKNMLKEEKEKLEQQVKLKNIQHSFLPQAPAAKGQVGSHKLIPLIGYPGIAMWQFMSPAVVDTSKDHLLRPPVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00770 233 Gene3D arf6 gtpase in complex with a specific effector, jip4 129 179 - -
Spst5g00770 233 Gene3D - 71 128 IPR036638 GO:0046983
Spst5g00770 233 CDD bHLH_AtILR3_like 83 158 - -
Spst5g00770 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 154 IPR036638 GO:0046983
Spst5g00770 233 Coils Coil 119 181 - -
Spst5g00770 233 SMART finulus 84 135 IPR011598 GO:0046983
Spst5g00770 233 PANTHER BHLH TRANSCRIPTION FACTOR 3 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Spst5g00770 233 Pfam Helix-loop-helix DNA-binding domain 82 128 IPR011598 GO:0046983
Spst5g00770 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 129 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00770 Spst-Chr5 6771569 6773259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00770 10 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 52.966 1.29e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g00770 HLH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00770 - - gmx:100806838 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00770 5 6771569 6773259 Spst5g00770 5 6771569 6773259 ECH