Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00756 ATGGCTGACTCCAATTGCTCTTCCACTCAAACTTCTTCACATTCTGCTGATTCAGGGAAGCGTGGATCTTCCAAGGTTGAATTTTCTGAAGATGAGGAAACTCTTGTCATCAAGATGTATAAACTAGTTGGGCAGAGGTGGTCTTTAATTGCTGGAAGAATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACCTCGAGATTCTCGAGTTCTAGTGAATGA 228 0.4211 MADSNCSSTQTSSHSADSGKRGSSKVEFSEDEETLVIKMYKLVGQRWSLIAGRIPGRTAEEIEKYWTSRFSSSSE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00756 75 SMART sant 24 72 IPR001005 -
Spst5g00756 75 FunFam MYB-like transcription factor 27 69 - -
Spst5g00756 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Spst5g00756 75 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Spst5g00756 75 Gene3D - 27 70 - -
Spst5g00756 75 MobiDBLite consensus disorder prediction 1 28 - -
Spst5g00756 75 CDD SANT 27 66 IPR001005 -
Spst5g00756 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 20 71 - -
Spst5g00756 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 74 IPR017930 -
Spst5g00756 75 MobiDBLite consensus disorder prediction 1 19 - -
Spst5g00756 75 SUPERFAMILY Homeodomain-like 25 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00756 Spst-Chr5 6627669 6628683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00756 20 71 MYB Transcription Factor Family AT5G14750 50.000 1.31e-15 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst5g00756 Myb_DNA-binding 3.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00756 - - gmx:100801532 128.642