Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00746 ATGTATGTAGCTTTGCAGTTGATGGAGGATGAAGTGATTGCAGCTATTGGTCCTCAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGTCAACGAACTCCATGTCCCTCTTGTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCTTATTTTGTTCGCAGCACCCAGAGTGACTATTATCAGATGTATGCAATTGCAGATTTGGTAGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTGGCAAAAAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGGTTCCCCCAAGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTGATGGAATCACGGGTCTTTGTTTTGCATGTTAATCCTGAAACTGGTTTGAACATTTTTGGTATTGCTGACAAGCTAGGAATGATGAACAGTGGTTATGTATGGATTGCAACAGATTCGTTGGCTTCAGCACTTGATTCATTGGAGCCAGTTGATCCAAAAACAATGAATCTCCTACAGGGGGTTTTGGCTTTACGTCATCACACTCCCGATACTATTGAAAAGAAGAATTTTCTCTCCAGGATGAAGAGACTAAGAATCACAGAGACCCCAAGTTTCAATTCCTATGCATTGTATGCATATGATACCGTTTGGTTAGTAGCCCGTGCTCTTGATGCTTTTTTAAAACAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTATGTTGCGTGACACAAATGGAAGCGTGCTGCATTTAGAATCGCTTCGCGTTTTTGATAATGGCCCTACTTTTCTCCAAACAATTTTGAGAACCAACTACACAGGTCTGACTGGTCTAGTTCAGTTTGATAATGACAGGAATAGAATTCATCCAGCATATGATATCTTGAACATTGGTGGATCTGGAATGCGTAGAATTGGTTACTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTTTGTATAAGAAGCCACCTAACACTTCAACGAGCAGCCAGCAACTGCATGATGTTATATGGCCTGGAGAAACTGCAGTTAAACCAAGAGGGTGGGTGTTCCCCAATAATGGAAAGCCATTGAGAATTGCAGTGCCTAATCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTCTTTGAAGCTGCCATAAGCTTGTTGCCTTATCCTGTCCCGCGTGAATACATATTATTTGGACCTGGTAATAGAAATCCTAGTTATGATGACCTTGCAAGTCAAGTTGCACTAAATAACTATGATGCAGCCGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACTCAACCTTACATGGAGTCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCTTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCCGAGTTCCGTGGTAGACCAAAGAAACAACTCATGACGGTCTTTTGGTTTAGTTTTTCAACAATGTTCTTCTCACACAGAGAGAACACAGTGAGTGGTCTAGGGAGATTAGTTCTAATCATATGGCTTTTTGTGGTGTTAATCATCAATTCTAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAAGTAATCAACCAATTGGAATTCAAGAAGGGTCATTTGCACGGAAGTATTTGACAGAAGAACTCAATATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATATGTTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTATGGCTGTTGTTGATGAGCTTCCTTATATTGAAATCTTAATGTCAAGTTCCAACTGTAAGTTCAGAACCGTTGGGCAGGAATTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTCTTACAACATGACTGTTCTACACAAGATAGTAATGTTGACATAAATAAACTTTCTCTAAGTTGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTATCCTTGCTTTGATCGCATTCTTCATTAGAGTGCTATGTCAATACACAAAATTCAGCCCAGAACGTGAGCAACATGATGAGGAAATTTCACCAGACAGACCCAAAGGTAAAAGGCCTTTCCGAACCACTGCTAGCTTCAGAGACTTGATGTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAGGCAAAAGAGTAAGAAAAGGAGACGCAGTCTGAGCTCAGATGGCCAATCTAGTTCATCCGCCTAA 2526 0.4169 MYVALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREIIAIYVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGSPKKDISDLLNGVNLMESRVFVLHVNPETGLNIFGIADKLGMMNSGYVWIATDSLASALDSLEPVDPKTMNLLQGVLALRHHTPDTIEKKNFLSRMKRLRITETPSFNSYALYAYDTVWLVARALDAFLKQGGVVSFSSDPMLRDTNGSVLHLESLRVFDNGPTFLQTILRTNYTGLTGLVQFDNDRNRIHPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLHDVIWPGETAVKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAISLLPYPVPREYILFGPGNRNPSYDDLASQVALNNYDAAVGDVTIVPNRTRFLDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFIFVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYVDALERGPKDGGVMAVVDELPYIEILMSSSNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLQHDCSTQDSNVDINKLSLSCFWGLFLICGIACILALIAFFIRVLCQYTKFSPEREQHDEEISPDRPKGKRPFRTTASFRDLMYFVDKKEKEIKEILRQKSKKRRRSLSSDGQSSSSA 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00746 841 Coils Coil 809 829 - -
Spst5g00746 841 PIRSF IGluLR_plant 1 841 IPR017103 -
Spst5g00746 841 FunFam Glutamate receptor 62 220 - -
Spst5g00746 841 CDD GluR_Plant 380 723 - -
Spst5g00746 841 SUPERFAMILY Periplasmic binding protein-like I 3 374 IPR028082 -
Spst5g00746 841 Gene3D - 493 613 - -
Spst5g00746 841 Pfam Ligand-gated ion channel 725 756 IPR001320 GO:0015276|GO:0016020
Spst5g00746 841 Gene3D - 377 492 - -
Spst5g00746 841 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 785 IPR015683 -
Spst5g00746 841 PRINTS Metabotropic glutamate GPCR signature 82 99 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst5g00746 841 PRINTS Metabotropic glutamate GPCR signature 66 82 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst5g00746 841 PRINTS Metabotropic glutamate GPCR signature 47 66 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst5g00746 841 PRINTS Metabotropic glutamate GPCR signature 15 41 IPR000337 GO:0004930|GO:0007186|GO:0016020
Spst5g00746 841 Gene3D - 614 727 - -
Spst5g00746 841 Gene3D - 62 335 - -
Spst5g00746 841 FunFam Glutamate receptor 493 623 - -
Spst5g00746 841 FunFam Glutamate receptor 619 727 - -
Spst5g00746 841 FunFam Glutamate receptor 377 493 - -
Spst5g00746 841 Gene3D - 4 310 - -
Spst5g00746 841 Pfam Receptor family ligand binding region 3 319 IPR001828 -
Spst5g00746 841 SUPERFAMILY Periplasmic binding protein-like II 360 725 - -
Spst5g00746 841 Pfam Bacterial extracellular solute-binding proteins, family 3 439 724 IPR001638 -
Spst5g00746 841 MobiDBLite consensus disorder prediction 821 841 - -
Spst5g00746 841 MobiDBLite consensus disorder prediction 779 798 - -
Spst5g00746 841 SMART GluR_14 383 725 IPR001320 GO:0015276|GO:0016020
Spst5g00746 841 CDD PBP1_GABAb_receptor_plant 4 339 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00746 Spst-Chr5 6516857 6520142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00746 4 690 Ion Channels AT1G05200 69.432 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00746 K05387 - gmx:100799912 1490.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00746 5 6516857 6520142 Spst5g00746 5 6516857 6520142 ECH
Spst5g00746 5 6516857 6520142 Spst11g01098 11 35310973 35319692 PCT