Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00744 ATGGAATATCACCTTTCTTCTGATACCAGTGAATGGGTTGAATTGAATGCTCATAAACTTCACCTCAACAACTTTGTGCTGCAGGCTCGGGTCCTTACGGTGAAGAAATTGGTGACTTGCAATTCAGGGTCAAGCATGAGAAAATTCATGATTTTGCACCTTGTGACATGGATTTGGATGTGTGGTCTTGCTCACAGCACAAGTCCTGCCAGTGTGAACATTGGTGCGATTTTTGCTTTCGATTCTATCATAGGTAGAGTTGCGAAGGAAGCTATGGAAATGGCCGTTTCTGATGTCAATGAGGATCCCACAGTTCTCAAGGGAACCAAACTCAACTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGGTGCCAACCTTGAACCTCATCAATTTTCTTGTTGTTGCTGGAGTTGCAAACTATTGAAATTCCTCCCCTTCAGCTGTTTTCTAAGTTTAGGCTTGAATTCAGACTTGGTCGAGGCTATGCATAAACATTGTCCATTAGATGTACTTGAGAAAGGGGTTGCAGCCATAATTGGTCCCCAGTCATCTGCCACAGCTCACACGGTTTCTCAAATAGCTGATGCCCTCCAAGTTCCTCTTGTTTCATATGCTGCCACTGATCCAACCCTGTCCTCCCTCCAGTTTCCGTTCTTTATTCGTACTACACAAAATGACTTGGCACAAATGACTGCAATGGCTGATTTAATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGATGATGATTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTTGAAAAACGGAAATTGAAAATTTCTTATAAACTGCCTTTGAGTATTAAGTTCGATCAGCATGAAATCACCAACATACTCAATCAATCCAAATTGTTTGGTCCTCGTGTGTATGTTGTTCATGTAAACCCTGACCCGAGGTTGAGAATTTTTTCTATTGCCCATAAACTTCAAATGATGGCCAAGGATTATGTCTGGCTTGTCACGGATTGGCTCTCAGTTACACTAGGTTCATTATCCCCAGTGAATCAGACCTCTTTCAATGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCGGATTCCAGAAAAAGGAAAGCTTTTGTTTCTCAGTGGATAAAAAGGAAAAAAGGAGGATTACCAAATAATAGTTTGAACTCCTATGGATTTTCTGCTTACGACACTGTTTGGGCAGTTGCACTTTCAATTGATAAATTCATTAAAGAATATAATAATATTACCTTCTTGCTTCATGATAACTCTACGCTATCTCATACAGAAGGAATGGGTATTCAGCTTGACAAACTCAAAATCTTCACTGGTGGATCTGATCTGGTCAACATATTATTAAAATCTAATTTTACTGGTGTGAGTGGTCAAGTTCTGTTTAATTCTGACAGAAATATTGTAAGTGGTGGTTATGATATTATCAATGTCAATCAGATGGGAATTACTAGAGTTGGTTTTTGGTCTAATTATTCAGGATTTTCAGTTGTGCCCCCTGATGCTCTTAAAAAAAAGGAACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACCTGGCCAGGAGGAAAGACAGATCGACCTCGTGGCTGGGTGATTGCTGATAATTCCAAGCCACTGAGAATAGGAGTTCCAAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAACTGCCAGATAGTCATAAAATTCAGGGATATTGCATCGATGTGTTCAAGAAAGCCCTAGAATTTATCCCATATGAAGTTCCCTTTGTATTCAAGCCTTTCGGGAATGGTAAAGCAAATCCCAACTATGATGCGCTTGTGAAAATGGTTGCTGATAATTTATATGATGCTGTTGTTGGAGACATTGCTATTGTGACAAACCGAACAAAGATTGTAGATTTTTCTCAACCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAGGATCAAGTGCTTGGGTATTCCTCCAACCATTTACAGCAGATATGTGGTGTGCTACTGCTGCCTCATTTTTGGTGGTTGGAATTGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTCCGTGGACCTCCTAAAAAGCAACTTGTGACAATGTTAATGTTCAGCCTCTCAACCTTGTTTAAGAAAAACCAGGAAGATACAGTAAGCTCCCTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACGGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATTGATAGCTTGATTGCAAGTAATTGGCCTATTGGATACCAAGTAGGATCATTTGCTTACAGCTATCTGGCGGATAATCTTTATGTATCAAAATCAAGACTTGTTTCACTAGGCTCCCCTGAGGAATATGCTTTAGCTCTGCGGAAGGGACCATCTGGTGGAGGGGTGGCAGCCATCGTCGATGAGCTTCCATATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATCGGACGGCCATTCGCCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTATGACATGTCTACAGCAATTTTGAAACTTTCCGAGAATGGAGATCTTCGTAAGATACATGAGCAGTGGTTCTGTAAAATGGGCTGTCCTGGACAAAGGACAAGCAACTCCAAGCCTGCACAGCTTCACTTGGTTAGCTTTTGGGGCCTGTATCTCTCATGTGGTGTTGTCTCTCTCGCTGCACTTGTACTGTTTCTGCTACGAATGATTCGGCAATACGCTCGCTTCAAACAAAAGCAAAAGGATATTGCTTCTTCATCCTCAGAACAACCATCAGGCATTCATTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCCAAGTGACAATCATGACAACCCCAACTGA 3000 0.4083 MEYHLSSDTSEWVELNAHKLHLNNFVLQARVLTVKKLVTCNSGSSMRKFMILHLVTWIWMCGLAHSTSPASVNIGAIFAFDSIIGRVAKEAMEMAVSDVNEDPTVLKGTKLNLIMKDAMCNAFLGSIGGANLEPHQFSCCCWSCKLLKFLPFSCFLSLGLNSDLVEAMHKHCPLDVLEKGVAAIIGPQSSATAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRTTQNDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGVSALSDELEKRKLKISYKLPLSIKFDQHEITNILNQSKLFGPRVYVVHVNPDPRLRIFSIAHKLQMMAKDYVWLVTDWLSVTLGSLSPVNQTSFNVLQGVVGLRQHIPDSRKRKAFVSQWIKRKKGGLPNNSLNSYGFSAYDTVWAVALSIDKFIKEYNNITFLLHDNSTLSHTEGMGIQLDKLKIFTGGSDLVNILLKSNFTGVSGQVLFNSDRNIVSGGYDIINVNQMGITRVGFWSNYSGFSVVPPDALKKKEHSRFSKDQKLDNITWPGGKTDRPRGWVIADNSKPLRIGVPKRASFVEFVTELPDSHKIQGYCIDVFKKALEFIPYEVPFVFKPFGNGKANPNYDALVKMVADNLYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINKAGSSAWVFLQPFTADMWCATAASFLVVGIVIWILEHRVNNDFRGPPKKQLVTMLMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLADNLYVSKSRLVSLGSPEEYALALRKGPSGGGVAAIVDELPYVELFLSKETDFGIIGRPFARSSWGFAFQRESPFAYDMSTAILKLSENGDLRKIHEQWFCKMGCPGQRTSNSKPAQLHLVSFWGLYLSCGVVSLAALVLFLLRMIRQYARFKQKQKDIASSSSEQPSGIHCSQVVVNFFNFIDEKEEAIKKMFTPSDNHDNPN 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00744 999 Gene3D - 665 795 - -
Spst5g00744 999 Gene3D - 843 902 - -
Spst5g00744 999 Gene3D - 69 149 - -
Spst5g00744 999 FunFam Glutamate receptor 550 666 - -
Spst5g00744 999 SUPERFAMILY Periplasmic binding protein-like I 67 546 IPR028082 -
Spst5g00744 999 Pfam Bacterial extracellular solute-binding proteins, family 3 556 895 IPR001638 -
Spst5g00744 999 FunFam Glutamate receptor 231 388 - -
Spst5g00744 999 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 72 953 IPR015683 -
Spst5g00744 999 Gene3D - 165 483 - -
Spst5g00744 999 CDD GluR_Plant 553 895 - -
Spst5g00744 999 SMART GluR_14 556 897 IPR001320 GO:0015276|GO:0016020
Spst5g00744 999 FunFam Glutamate receptor 666 804 - -
Spst5g00744 999 FunFam Glutamate receptor 792 899 - -
Spst5g00744 999 Pfam Ligand-gated ion channel 896 927 IPR001320 GO:0015276|GO:0016020
Spst5g00744 999 SUPERFAMILY Periplasmic binding protein-like II 534 895 - -
Spst5g00744 999 Pfam Receptor family ligand binding region 89 492 IPR001828 -
Spst5g00744 999 Gene3D - 231 508 - -
Spst5g00744 999 PIRSF IGluLR_plant 44 139 IPR017103 -
Spst5g00744 999 PIRSF IGluLR_plant 161 999 IPR017103 -
Spst5g00744 999 CDD PBP1_GABAb_receptor_plant 73 512 IPR044440 -
Spst5g00744 999 Gene3D - 547 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00744 Spst-Chr5 6505140 6510387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00744 69 997 Ion Channels AT2G32400 54.390 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00744 K05387 - gmx:100784247 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00744 5 6505140 6510387 Spst5g00744 5 6505140 6510387 ECH
Spst11g01098 11 35310973 35319692 Spst5g00744 5 6505140 6510387 PCT