Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00729 ATGGCGAGAACAGTCTCCAACAACGACAGCACCAACGATGAAACAGGAGATGACAGCAACACTGCAACCAAGGACGAGGGCGAGGTCAAAGGTCGCGTGAGGAAGGGGCCGTGGACCCCGGCGGAAGACGCGATCCTTGTAGAGTACGTGAAAAAGCACGGTGAAGGGAATTGGAACTCCGTGCACAAGAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGTAGACTTCGCTGGGCCAACCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCTGAGGAAGAGCAAATCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCTAGAATGGCCGCACAGTTACCTGGCAGGACGGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAAGTGCATGCAGAAGCCACTGCATACCATCTACAAAACCGCTACTTGGAACACCAACCTCATTCTTCTGCATCATTTGCTTTGCTCCTATCTTCTTGTTACCCCAAGAAGATCAATGACCCTGACCAACCCAATCGCTCCAATGCAAACCCGCTGCAAAACCAACCTGATTCTGCCAACTGTTACATTAATCCAAGCCAGCAGCAGTTCAAGTTTTCCAATGAAAATGGTGGAAATTCAAATCTTGCTGTGCCATTATCCCCTCTTTCTCCGTATGGATCATCGTCCTCCTCCCTTCTTAACCACAGTTTTGGGGATCATGGCTACATAGCAGAATCCCCATATGAACCCTTTCCTTTGGTGCGAGGCTCCACCACCGACATCTCTTCCAACCAAACACCAACCCCTGCTTCATCATATGCTAGCGGTGTTGATGGCCTGATGGGAGCTTCAAGCATGGTTAATAATAATAATAACTATAATAATGACTACTATGAAGTTGCACCATTGTCTCCTCCAGGAAACAGTGGCTTGCTGGATGCTTTAGTCATGGAGGCCCAAGGACTTTCTCACAATGACAAGTCCAAGAGTGAGGAGGACCCAACCCTAGCTGGGAAGCTATCTTGTAAGAGAAAGAACATGGAATATGCAGAGGAGGGAGGCACTGCGCCTGTGGTGTCAGCCATGAAGAAGAGCAGTGGAAACAGTACTACTACTGAAAACCAGAGGGATGATGATATTAGCTCCTCTCAATTGTCAAAAGGGAAGAAAGTGATGGGGGAGGATCCGTTGGAGGAGATGAACTCGATGGACGATGACCTGTTTAGTCTGCTGAACCAGTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGAAGAGGGGAAAGTCAGTCATTGGGACTTGAAAACCAGCCCAATGCTTCACCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTCGGAACTCGCTGGAACAACATGCCCAGCATCTGCTAA 1437 0.4836 MARTVSNNDSTNDETGDDSNTATKDEGEVKGRVRKGPWTPAEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPEVHAEATAYHLQNRYLEHQPHSSASFALLLSSCYPKKINDPDQPNRSNANPLQNQPDSANCYINPSQQQFKFSNENGGNSNLAVPLSPLSPYGSSSSSLLNHSFGDHGYIAESPYEPFPLVRGSTTDISSNQTPTPASSYASGVDGLMGASSMVNNNNNYNNDYYEVAPLSPPGNSGLLDALVMEAQGLSHNDKSKSEEDPTLAGKLSCKRKNMEYAEEGGTAPVVSAMKKSSGNSTTTENQRDDDISSSQLSKGKKVMGEDPLEEMNSMDDDLFSLLNQFPLEMPMPEWYRRGESQSLGLENQPNASPPDPADQEYAWTLGTRWNNMPSIC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00729 478 Pfam Myb-like DNA-binding domain 38 97 - -
Spst5g00729 478 MobiDBLite consensus disorder prediction 187 209 - -
Spst5g00729 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Spst5g00729 478 MobiDBLite consensus disorder prediction 1 17 - -
Spst5g00729 478 FunFam MYB-related transcription factor 34 87 - -
Spst5g00729 478 FunFam Transcription factor MYB97 90 168 - -
Spst5g00729 478 MobiDBLite consensus disorder prediction 440 462 - -
Spst5g00729 478 MobiDBLite consensus disorder prediction 364 405 - -
Spst5g00729 478 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Spst5g00729 478 SMART sant 87 135 IPR001005 -
Spst5g00729 478 SMART sant 34 84 IPR001005 -
Spst5g00729 478 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Spst5g00729 478 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Spst5g00729 478 MobiDBLite consensus disorder prediction 1 36 - -
Spst5g00729 478 MobiDBLite consensus disorder prediction 374 401 - -
Spst5g00729 478 Gene3D - 35 87 - -
Spst5g00729 478 Gene3D - 90 136 - -
Spst5g00729 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Spst5g00729 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 14 444 - -
Spst5g00729 478 MobiDBLite consensus disorder prediction 18 36 - -
Spst5g00729 478 CDD SANT 37 82 IPR001005 -
Spst5g00729 478 MobiDBLite consensus disorder prediction 183 209 - -
Spst5g00729 478 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00729 Spst-Chr5 6330784 6333632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00729 33 478 MYB Transcription Factor Family AT2G32460 37.885 1.25e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g00729 Myb_DNA-bind_6 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00729 K09422 - gmx:100798860 745.347