Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00727 ATGCCATATGAATGGCAGTATTCAAATTTCAATAAGGAAAAAGTTGTACCGCAGAAGATTATAGCCCCTGACGTTGAACTTCGTGCGTGGCGCTTCGTTACTGTGTACAAGAAGGGTGTCACTTCCCGCCGTTTCAGGAGTGAGCAGCAGCATAAGGATGATGCAGTTGTGGAAGACGAAGCCAAGGGCCAGTGCAGCAACAATAAAGATAAAGATGAAGAATTGGGTGGGAGCTCCCGGCTGGACTTGAATGTAAATCGACTTTCAAGCATCACTTTTTCCGGTGAAGATTATGATTTTGATTCATCTGATGGTGACAAACCTTCATTGAAAAAGGGAAAGGCGGCGTTGTCAAGAGAGAAAAGAAAAAGTATCAACTCAGTAAAAGGGGAACCGAGTGATTTGGTTAGAGTGGTGGGTCATGCTTACATGATGGTTTCTCCAGTACTGGTTCCCTCTGTTTTTAAGGGAACTAAGAAGAGGAAATATACAAAAAAAGGAAGTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCGTGGGAAGAGGAGCAAGAGAAATGGATTGATCAGCATATATCAGAAGATGTTGACTTAGATAATCAGAGTGAAGTAATGAGTGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAAGGAATGGCTAGCCTGGGCTTTGAAACAGGAGGATTCTGCTAGTAGAGGGGGAATACTTGCAGACGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGAGAATTCCAAGAAAGTAGTGAGCCAGATCAATCCATACCGTGTTCATCCAGGCTGTTGCCTGCAATCAAAGGAACCCTTGTCATATGTCCTGTGGTTGCTGTTACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGATTTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATAACTACGTACTCTGTTGTTGAGACTGAGTACAGGAAGCATATGATGCCGCCTAAAGAGAGATGCCCATATTGTGGAAGATTATTTTTGCCGAATAAGCTAATGTATCATCAGAACTATTTTTGTGGACCTAATGCTATTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGAGAATTTATTAAAGGGAAGACCAAGGAAGGTGACAGTAGCAAGATGTTGAAGGGTTCTAACAAGAAAAAGGGAGATGAAATGTGCATAGATATGGAAGATTCTGATGCTGCACCTGTACGTAGCGATAGATCATTTCTCCATGCTGTGAAATGGCAGCGGATAATATTGGATGAGGCACATTATATAAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCGTTAGAGTCTACCTACAAATGGGCGTTAAGTGGCACTCCCCTTCAGAATCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCTTATTACTTGTGTAAGGACTGCGACTGCAGGATTCTTGATCACAGAGTCTATTCCCTCAGCTCTAAAGAATGTTCAGTCTGCAATCACAGTTCTGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCTATTCAATCTTATGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGACGCACTAAAATAGGCAGAGCGGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAGAGTCAAGCACAATTTAATACGGAAAAAGCTGTTGGTAGATACATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACAAGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAGTGCAGTTATGACCAGTAATGCTACTGTTGAACAAATTTGTGGTATTTGCCATGAGCCTGTAGAAGATCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCAGGGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCCACGTGCTCTAAATTACTTACAGTTGATTTAACACCCAACAAGGATCTTGGAGATCAGGCTAAAACAACAATTAAGGGTTTTAGATCCTCGAGCATTTTGAATAGGATTCGCCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCCTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTAGGGATGCTGCCATTCGGAGATTCACTGAAGATCCAGATTGCAAAATTTTTCTAATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAATCCTGCCGTGGAACGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGATTTGTTATCGAGAATACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTCGTGTTTGAAGGGACGATTGGTGGTTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTGA 2817 0.4146 MPYEWQYSNFNKEKVVPQKIIAPDVELRAWRFVTVYKKGVTSRRFRSEQQHKDDAVVEDEAKGQCSNNKDKDEELGGSSRLDLNVNRLSSITFSGEDYDFDSSDGDKPSLKKGKAALSREKRKSINSVKGEPSDLVRVVGHAYMMVSPVLVPSVFKGTKKRKYTKKGSKGDSRPVLLWNAWEEEQEKWIDQHISEDVDLDNQSEVMSETAEAPSDLTMPLLRYQKEWLAWALKQEDSASRGGILADEMGMGKTIQAIALVLAKREFQESSEPDQSIPCSSRLLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGANRGRSGDRFADYDFVITTYSVVETEYRKHMMPPKERCPYCGRLFLPNKLMYHQNYFCGPNAIRTEKQSKQAKKKREFIKGKTKEGDSSKMLKGSNKKKGDEMCIDMEDSDAAPVRSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHRVYSLSSKECSVCNHSSVRHFCWWNKYVATPIQSYGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTEKAVGRYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRSAVMTSNATVEQICGICHEPVEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPTCSKLLTVDLTPNKDLGDQAKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00727 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 580 IPR027417 -
Spst5g00727 938 Pfam Zinc finger, C3HC4 type (RING finger) 684 724 IPR018957 GO:0046872
Spst5g00727 938 MobiDBLite consensus disorder prediction 100 128 - -
Spst5g00727 938 MobiDBLite consensus disorder prediction 43 78 - -
Spst5g00727 938 Gene3D - 190 357 IPR038718 -
Spst5g00727 938 Gene3D - 602 936 IPR027417 -
Spst5g00727 938 MobiDBLite consensus disorder prediction 99 128 - -
Spst5g00727 938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 748 IPR013083 -
Spst5g00727 938 SMART helicmild6 799 882 IPR001650 -
Spst5g00727 938 ProSiteProfiles Zinc finger RING-type profile. 684 725 IPR001841 -
Spst5g00727 938 ProSitePatterns Zinc finger RING-type signature. 699 708 IPR017907 -
Spst5g00727 938 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 503 IPR014001 -
Spst5g00727 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 936 IPR027417 -
Spst5g00727 938 SUPERFAMILY RING/U-box 679 731 - -
Spst5g00727 938 Pfam SNF2-related domain 234 661 IPR000330 GO:0005524|GO:0140658
Spst5g00727 938 SMART ring_2 684 724 IPR001841 -
Spst5g00727 938 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 764 928 IPR001650 -
Spst5g00727 938 Pfam Helicase conserved C-terminal domain 768 882 IPR001650 -
Spst5g00727 938 CDD DEXDc_SHPRH-like 220 518 - -
Spst5g00727 938 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 936 - -
Spst5g00727 938 Gene3D - 379 600 IPR038718 -
Spst5g00727 938 CDD SF2_C_SNF 766 893 - -
Spst5g00727 938 SMART ultradead3 216 521 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00727 Spst-Chr5 6296594 6304644 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00727 145 938 RAD5 or RAD16-like Gene Family AT1G05120 65.955 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst5g00727 SNF2_N 6.1e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00727 K15083 - gmx:100798333 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00727 5 6296594 6304644 Spst5g00727 5 6296594 6304644 ECH