Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00725 ATGGAGCTTCGTTCTTGTCGACGCCTTTCCAATCCCACAGTTGCTGGGAATGAGCAGCAGCCTAAGGATGATGCAGTTGTGGAAGACGAAACCAAGGGCCAGTGTAGCAACAATAAAGATAAAGATGAAGAATTGGGTGGGGGCTTCCAGCTGGACTTGAATGTAAATCCACTTTCAAGCATCACTTTTTCCGGTGGAGAAGATTATGCTTCTGATTCATCTGATGGTGACAAACCTTCATTGAAAAAGGGAAAGGCGGCATTGTCAAGAGAGAGAAAAAAAAGTATGAACTCAGTAAAAGGGGAACCGAGTGATTTGGTTAGAGTGGTGGATCATGAATACACAATGATTTCTCCATTATTATTTCCCTCTTTTTTTAAGGGAACTAAGAAGAGGAAATATACCAAAAAAGGAAGTAAAGCAGTGTTGTTGTGGAATACGTGGGAAGAGGAGCAAGAGAAATGGATTGATCAGCATATATCAGAAGATGTTGACTTAGATAATCATAGTGAAGTAAAGAGTGAAACTGCTGAGGCACCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAGGATTCTGCGAGTAGAGGGGGAATACTTGCAGACGAAATGGGAATGGGGAAGACTGTTCAAGCAATTGCTCTTGTCCTTGCCAAACGGGAATTCCAAGAAAGTAGTGAGCCAGATCAATCCAAACCATGTTCATCCAGCCTGTTGCCTGCAATCAAAGGAACCCTTGTCATATGTCCTGTGGTTGCTGTTACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGATTTATCATGGGGCTAATAGAGGGTGGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGACTGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCAATTAAGCTAATGTATCATCAGAACTATTTTTGTGGACCTAATGCTATTAGAACAGAAAAACAATCAATGCAAGCTAAGAAGAAAAGAGAAGTTATTAAAGGGAAGACCAAGCAAGGTGACAGTAACAAGATGTTGAAGGGTTCTAACAAGAAAAAGGGAGATGAAATGTGCATAGATATGGAAGATTCTGATGTTGCACCTGTACGTAGTGATAGATCATTTATCCATGCCGTGAAATGGCAGCGGATAATATTGGATGAGGCACATTATATAAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCGTTAGAGTCTACCTACAAATGGGCTTTAAGTGGCACTCCCCTTCAAAATCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCTTATTACTTGTGTAAGGACTGCGACTGCAGGATTCTTGATCACAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCTGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCGATTCAATCTTATGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTAAAGAACATAGTATTAAGGCGCACTAAAATAGGCAGAGCGGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCGCTATACAATGAAAGTCAAGCACAATTTAATACGGAAGAAGCTCTTGGTAGATACATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACAAGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAGTGCAGTTATGATCAGTAATGCTACTGTTGAACAAATTTGTGGTATTTGCCATGAGCATGTAGAAGATCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCAGGGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCCATGTGCTCTAAATTACTTACAGTTGATTTAACCCCCAACAAGGATGTTGGAGATCAGGCTAAAACAACAATTAAGGGTTTTAGATCCTCGAGTATTTTGAATAGGATTCGACTTGAGAACTTTCAGACAAGCACCAAGATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAACTACTCGTTACACAAGTTGCAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTAGGGGTGCTGCCATTCGGAGATTCACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCTGCCATGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGATTTGTCATTGAGAATACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTCGTGTTTGAAGGGTAA 2640 0.4083 MELRSCRRLSNPTVAGNEQQPKDDAVVEDETKGQCSNNKDKDEELGGGFQLDLNVNPLSSITFSGGEDYASDSSDGDKPSLKKGKAALSRERKKSMNSVKGEPSDLVRVVDHEYTMISPLLFPSFFKGTKKRKYTKKGSKAVLLWNTWEEEQEKWIDQHISEDVDLDNHSEVKSETAEAPSDLTMPLLRYQKEWLAWALKQEDSASRGGILADEMGMGKTVQAIALVLAKREFQESSEPDQSKPCSSSLLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGANRGWSGDRFADYDFVITTYSVVETEYRKHMMPPKERCPYCGKLFLPIKLMYHQNYFCGPNAIRTEKQSMQAKKKREVIKGKTKQGDSNKMLKGSNKKKGDEMCIDMEDSDVAPVRSDRSFIHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSYGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTEEALGRYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRSAVMISNATVEQICGICHEHVEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPMCSKLLTVDLTPNKDVGDQAKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKLQSGVSCVQLNGSMSLAARGAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAMERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEG 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00725 879 MobiDBLite consensus disorder prediction 358 386 - -
Spst5g00725 879 Pfam Helicase conserved C-terminal domain 730 846 IPR001650 -
Spst5g00725 879 Gene3D - 144 324 IPR038718 -
Spst5g00725 879 Gene3D - 351 562 IPR038718 -
Spst5g00725 879 MobiDBLite consensus disorder prediction 64 102 - -
Spst5g00725 879 MobiDBLite consensus disorder prediction 1 49 - -
Spst5g00725 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 876 IPR027417 -
Spst5g00725 879 Gene3D - 564 879 IPR027417 -
Spst5g00725 879 SMART ring_2 646 686 IPR001841 -
Spst5g00725 879 SMART ultradead3 183 475 IPR014001 -
Spst5g00725 879 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 43 879 - -
Spst5g00725 879 ProSiteProfiles Zinc finger RING-type profile. 646 687 IPR001841 -
Spst5g00725 879 Pfam SNF2-related domain 201 623 IPR000330 GO:0005524|GO:0140658
Spst5g00725 879 Pfam Zinc finger, C3HC4 type (RING finger) 646 686 IPR018957 GO:0046872
Spst5g00725 879 MobiDBLite consensus disorder prediction 71 102 - -
Spst5g00725 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 470 IPR014001 -
Spst5g00725 879 CDD SF2_C_SNF 728 857 - -
Spst5g00725 879 SMART helicmild6 761 846 IPR001650 -
Spst5g00725 879 CDD DEXDc_SHPRH-like 187 542 - -
Spst5g00725 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 542 IPR027417 -
Spst5g00725 879 ProSitePatterns Zinc finger RING-type signature. 661 670 IPR017907 -
Spst5g00725 879 SUPERFAMILY RING/U-box 640 693 - -
Spst5g00725 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 879 IPR001650 -
Spst5g00725 879 MobiDBLite consensus disorder prediction 22 47 - -
Spst5g00725 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 712 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00725 Spst-Chr5 6272172 6279431 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00725 130 879 RAD5 or RAD16-like Gene Family AT1G05120 66.534 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst5g00725 SNF2_N 1.4e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00725 K15083 - gmx:100786366 1450.65