Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00720 ATGGCAAGAGGTGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCATAAGCCTGTAGTTCTCAACTCTTTCCCTGAAGACAACACCACCATCAACAACAGCAGTGTCCAACACAAGTGGAAACTTGGTCCCAACATGGATACCACAGTTAACAGAAACAGGTCTCAATCATCTTCTCCAAACACCAACACCACCTCCTCCTCCATCTCCACTATCCCCTTCCAAGTCAACCGTACCTGTGATGAAAACAGGCCTCACATCGACGAGATGGACTTCTTCCCTAACAAGACCGATGATTATGATAACAACCATATGAATAACTGTGCCTCTGCCTCCACCTCCGCACCTCCCTCACTTGACCATCTTGTTCACACACATGATCATTCATCCACTACTAATATATTGGATTTGGAAGTAGACACTGGTTTGAATCTTCTTACCACCAACACAAGTAGTGATCATTCCATGGTGGACGATGAGACATACCCTGATTCAAAAGAAAAAAGAGCCAAGAGTGAGATGTTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGCGGAGAATCATAGGCTGAAGAGCATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGACGCATTTGGTGAGTTTGATGCAACAACAGAAGGAGGAGGAGGTGGCTGAACAACAAGTGTTTGATAGAAAACTAGATGAGGAGAAACAAAGTGTGAATGGGACCTTGGTCCCAAGACAATTTATGGATCTTGGGTTGGCTACTAATGCTGATAGTAGTGAACCTTCCCTTTCTTCCTCGGCGGGAAGAAGTCAGGATCTGTCAAAGTCGCCAAAAAATAATGAGGTAGCATCCAAGGAATTTGAGACCAAGAAAAGTGTTAGTGATAACGGATTTGATCAAGACAAGAAGGAATTTGTAAGGCGAATTGAAAAGGAAGACAGTCCCTCAGAAGGGGTTGCCGCTAATAACAATGTTCCAAATCCAAAAAACGTTGATCACGCTGAGGCTACGATGAGAAAGGCAAGGGTTTCTGTTAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTAGTCACAACATATGAAGGGAATCACAACCATCCTTTGCCTCCAGCGGCTATTGCAATGGCACAAACCACTTCCTCAGCAGCTAAAATGCTGCTTTCAGGATCCATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGATTTGACTCACTCTCCAAACCCACTACAGCTTTCCAAGTCCCAAAACCAAGTCCAGTTCCCCTTCCCTGGTATCCCTCAGAACTTTGCCAATTCCCCATCCTCATTGCTGCCTCAGATATTTGGCCAGGCACTGTATAACCAATCCAAGTTTTCTGGCCTCCAAACGTCTCAAGATGCAGACCCTTCCCAATCGAGTAACCAATCTCAACGGCCACCACCACACCTTGCTGACACAGTTAGTGCCGCCACTGCAGCCATTGCAGCTGACCCTAACTTCACAGCAGCTTTGGCAGCAGCCATCACTTCTATTATCGGGGGTTCAAATCCAAACAACAATATCAGTACTAATAATAACGGCACCACACCGAACAACACCAGCAATGGCAATATTGCATCAAACAACAACAAATAA 1848 0.4573 MARGGGLSIDSDPIGSFFPHKPVVLNSFPEDNTTINNSSVQHKWKLGPNMDTTVNRNRSQSSSPNTNTTSSSISTIPFQVNRTCDENRPHIDEMDFFPNKTDDYDNNHMNNCASASTSAPPSLDHLVHTHDHSSTTNILDLEVDTGLNLLTTNTSSDHSMVDDETYPDSKEKRAKSEMFVLQAELERMKAENHRLKSMLDQVNTNYNALQTHLVSLMQQQKEEEVAEQQVFDRKLDEEKQSVNGTLVPRQFMDLGLATNADSSEPSLSSSAGRSQDLSKSPKNNEVASKEFETKKSVSDNGFDQDKKEFVRRIEKEDSPSEGVAANNNVPNPKNVDHAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILVTTYEGNHNHPLPPAAIAMAQTTSSAAKMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQLSKSQNQVQFPFPGIPQNFANSPSSLLPQIFGQALYNQSKFSGLQTSQDADPSQSSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGSNPNNNISTNNNGTTPNNTSNGNIASNNNK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00720 615 Coils Coil 171 219 - -
Spst5g00720 615 Gene3D WRKY domain 343 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst5g00720 615 MobiDBLite consensus disorder prediction 530 555 - -
Spst5g00720 615 MobiDBLite consensus disorder prediction 584 615 - -
Spst5g00720 615 Pfam WRKY DNA -binding domain 360 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00720 615 ProSiteProfiles WRKY domain profile. 353 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00720 615 MobiDBLite consensus disorder prediction 259 335 - -
Spst5g00720 615 MobiDBLite consensus disorder prediction 36 74 - -
Spst5g00720 615 SUPERFAMILY WRKY DNA-binding domain 351 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst5g00720 615 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 145 595 IPR044810 GO:0003700
Spst5g00720 615 MobiDBLite consensus disorder prediction 530 553 - -
Spst5g00720 615 SMART WRKY_cls 358 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00720 615 MobiDBLite consensus disorder prediction 259 282 - -
Spst5g00720 615 MobiDBLite consensus disorder prediction 283 319 - -
Spst5g00720 615 FunFam probable WRKY transcription factor 31 343 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00720 Spst-Chr5 6247622 6250206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00720 142 597 WRKY Transcription Factor Family AT1G62300 52.866 4.58e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst5g00720 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00720 - - gmx:100127384 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00720 5 6247622 6250206 Spst6g01208 6 11063700 11066049 ECH
Spst5g00720 5 6247622 6250206 Spst5g00720 5 6247622 6250206 ECH
Spst5g00720 5 6247622 6250206 Spst11g01120 11 35541549 35544408 PCT