Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00701 ATGTTTCAAAATATGGTCTCCGAAAGAGTGAAACTATTTAAACCTGACCTGACCAAAGGTGGTGGTGGAAATGCAGTGTACGTACACAGAGCAAGTGAAGGAATTCTCCTCTCTGATCTGCCTATAAATCTACTAAGCAAACACAAAGGACAGTCACAATTTAAAAAAAGAAAAATGTCAATGGACATGATGGCAGCCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCGTAGTTACGGTTAGATGTGGACATTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTGTCAAGAAACTCAGCAATTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAACAAGGAACTGGGATCATCATCAAAATGCAAATCATTTGAGTCCGTAGATCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAACAGGTTCATTAAGGAAGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGAGAAGCTTTTAGCACAGCTGCAAAAAATTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 735 0.4163 MFQNMVSERVKLFKPDLTKGGGGNAVYVHRASEGILLSDLPINLLSKHKGQSQFKKRKMSMDMMAAERVCYVHCNFCNTTLAVSVPCSSLLTVVTVRCGHCANLLSVNMGASLQPFPCQETQQFSTVAKLQRQHLSVQEACNKELGSSSKCKSFESVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00701 244 CDD HMG-box_SF 175 211 - -
Spst5g00701 244 FunFam Axial regulator YABBY 166 235 - -
Spst5g00701 244 Pfam YABBY protein 65 221 IPR006780 GO:0007275
Spst5g00701 244 Gene3D High mobility group box domain 159 217 IPR036910 -
Spst5g00701 244 PANTHER PROTEIN YABBY 6-RELATED 59 230 IPR006780 GO:0007275
Spst5g00701 244 SUPERFAMILY HMG-box 166 214 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00701 Spst-Chr5 6084779 6094756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00701 59 244 C2C2-YABBY Transcription Factor Family AT1G08465 65.445 1.08e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst5g00701 YABBY 6.2e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00701 K25796 - gmx:100785458 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00701 5 6084779 6094756 Spst11g01135 11 35682469 35688711 PCT