Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00687 ATGAAAGAAAGCATTAATGGATGGAGCCGAGAAAAGCGTGAGAAAGCATCCAATCATGGCAAAATGCATGAGCCTCATCAGAAGTTGTCGGCAACAACCATGCAAGCATTAAGCATGGATGAAATTGAAATCCCTGCCCATTTCCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACTGTTTGCACTGGAATCACTTATGATAGAGAGAACATTGAGAAATGGTTGTTTTCATGCAAGAACAATACATGCCCCGTTACCAAGCTGTGCCTATTGGACCATGATCTCACGCCAAATCACACTCTACGCAGGTTGATTCAATCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCGAAGTCACCAGTAGACAGAACTCAGATTGTGAAACTCCTCACAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGCCTCACAAGGCTTCGATCTATTGCCTTTGAGGGTCAAAGGAACAAAACCTGTTTAGAGTCTGCAGGAGTGGTAGAATTCTTAGCCTCAACCATGAAGCACAACACAGAAGAAAACTCAACTGTTCTCAGTGAAGCAGCTATTGAAGTCTTATTCCACCTCAACCTTTCTGAGTCTCAGCTTAAAGCTCTCATATATAACGAGGGGTTTCAGTTTATTGAGTCATTGTTTCAGGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCATGCTACTTAGATCAGCATTGGAGGTGGCTGATCCTATCCAATTGATCAGTGTCAAAACAGTGTTGTTTGTGCAAATCTTGCGCGTGTTGCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTGATTGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCCGTCCTCATTGAGCTACTTATTGGTGCATCGGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGCTGCAGGAGTGGCCATTGTATCCAAGAAAATTCTAAGGGTCTCTCACGTGGCAAGTGATAGAGGTGTTAGAATTTTGACCTCCATTTGTAGGTATTCGGCCAATTCTAGAGTCCTTCAAGAAATGTTGCAGGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGAATTGCGGTTTCAAGACTAAAGAGAGGGCCAAGGAGATACTCAAATTGCACTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTACCTTTGTTATCTTCCTATCCTTGA 1323 0.4444 MKESINGWSREKREKASNHGKMHEPHQKLSATTMQALSMDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKLCLLDHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPVDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGVVEFLASTMKHNTEENSTVLSEAAIEVLFHLNLSESQLKALIYNEGFQFIESLFQVLRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVQILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLIGASERRTCELILIALDQLCGCAEGRAELLNHAAGVAIVSKKILRVSHVASDRGVRILTSICRYSANSRVLQEMLQVGAVSKLCLVLQVNCGFKTKERAKEILKLHSSVWKNSPCIPVPLLSSYP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00687 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 120 IPR013083 -
Spst5g00687 440 MobiDBLite consensus disorder prediction 1 26 - -
Spst5g00687 440 Gene3D - 132 426 IPR011989 -
Spst5g00687 440 MobiDBLite consensus disorder prediction 1 27 - -
Spst5g00687 440 CDD RING-Ubox_PUB 45 98 IPR045210 -
Spst5g00687 440 PANTHER WDSAM1 PROTEIN 40 432 IPR045185 GO:0061630
Spst5g00687 440 Pfam U-box domain 44 113 IPR003613 GO:0004842|GO:0016567
Spst5g00687 440 FunFam RING-type E3 ubiquitin transferase 38 121 - -
Spst5g00687 440 SUPERFAMILY RING/U-box 34 115 - -
Spst5g00687 440 SUPERFAMILY ARM repeat 135 414 IPR016024 -
Spst5g00687 440 SMART Ubox_2 47 111 IPR003613 GO:0004842|GO:0016567
Spst5g00687 440 ProSiteProfiles U-box domain profile. 43 118 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00687 Spst-Chr5 5943049 5944968 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00687 40 440 U-box Gene Family AT2G35930 55.556 4.92e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00687 - - gmx:100778012 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00687 5 5943049 5944968 Spst5g00687 5 5943049 5944968 ECH
Spst5g00687 5 5943049 5944968 Spst11g01145 11 35792708 35793907 PCT